| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 900173 = | 93 (0.950) | 14 (0.160) | 7/140 | NT | 18.0% | coding (174/273 nt) | USA300HOU_RS04450 | hypothetical protein |
| ? | USA300TCH1516_ALE | 900207 = | 46 (0.530) | coding (208/273 nt) | USA300HOU_RS04450 | hypothetical protein | |||||
TTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGTAC > USA300TCH1516_ALE/900118‑900295 | tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt > 1:3464699/1‑91 (MQ=255)tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt > 1:2454419/1‑91 (MQ=255)tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt < 1:405268/91‑1 (MQ=255)tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt > 1:2580953/1‑91 (MQ=255)tttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATGCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAAt > 1:4140141/1‑91 (MQ=255) ttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATg > 1:2298585/1‑91 (MQ=255) ttCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATg > 1:2298987/1‑91 (MQ=255) ttatgacgcgccttcatgtactcctcgaatcgcggaatactgataacaatcatTGTTGATGATTTATATTACTCGTTATCATCAACAATGa > 1:2256345‑M1/54‑91 (MQ=255) tCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGa > 1:1136348/1‑91 (MQ=255) tataGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTg > 1:2608493/1‑91 (MQ=255) taGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGtt < 1:2795234/91‑1 (MQ=255) taGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGtt < 1:2795735/91‑1 (MQ=255) gTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTAt > 1:2991874/1‑91 (MQ=255) ttCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATc < 1:1245399/91‑1 (MQ=255) cGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAg > 1:1922453/1‑91 (MQ=255) cGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAg > 1:1922473/1‑91 (MQ=255) cGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAg > 1:1922574/1‑91 (MQ=255) cGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAg > 1:1923322/1‑91 (MQ=255) aaTCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTc < 1:1035382/91‑1 (MQ=255) aTCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTcc > 1:3391111/1‑91 (MQ=255) aTCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTcc > 1:2370847/1‑91 (MQ=255) aTCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTcc > 1:2370902/1‑91 (MQ=255) aTCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTGATCAGTATTcc > 1:3764065/1‑91 (MQ=255) tCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCcg < 1:1699584/91‑1 (MQ=255) gCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCcgcg > 1:1697293/1‑91 (MQ=255) gCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCcgcg < 1:231133/91‑1 (MQ=255) cATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGa < 1:703127/91‑1 (MQ=255) aTTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGAt < 1:3030442/91‑1 (MQ=255) ttttAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGAtt > 1:2334400/1‑91 (MQ=255) tttAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTc < 1:908078/91‑1 (MQ=255) aaGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCgagga > 1:1295054/1‑91 (MQ=255) agagTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCgaggag > 1:1364379/1‑91 (MQ=255) agTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTa > 1:252419/1‑91 (MQ=255) ggAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATg > 1:2362712/1‑91 (MQ=255) ggAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATg > 1:2363173/1‑91 (MQ=255) aaaaGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAg < 1:3587393/91‑1 (MQ=255) aGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGgcg < 1:394450/91‑1 (MQ=255) ttCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGt < 1:2683935/91‑1 (MQ=255) tCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTc < 1:1551267/91‑1 (MQ=255) tCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTc < 1:3823058/91‑1 (MQ=255) tCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTc < 1:2876832/91‑1 (MQ=255) tCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTc < 1:3830897/91‑1 (MQ=255) cTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCa > 1:1775495/1‑91 (MQ=255) cTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCa < 1:196143/91‑1 (MQ=255) cTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCa > 1:1913254/1‑91 (MQ=255) cTAAAGGTGTTGATGATTTATATGACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCa < 1:2982409/91‑1 (MQ=255) tAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCAt > 1:3270311/1‑91 (MQ=255) tAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATGCCGCGATTCGAGGAGTACATGAAGGCGCGTCAt < 1:544605/91‑1 (MQ=255) aaaGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATa < 1:321692/91‑1 (MQ=255) aaaGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATa < 1:3095658/91‑1 (MQ=255) tcattgttgatgataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATaa > 1:2256345‑M2/39‑91 (MQ=255) gtgtTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATaaaaa > 1:3097465/1‑91 (MQ=255) GTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAAt < 1:2895264‑M1/91‑1 (MQ=255) ttgatgataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATg > 1:2696938‑M2/33‑91 (MQ=255) tgatgataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATgg > 1:528270‑M2/32‑91 (MQ=255) tgatgataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATgg > 1:2275987‑M2/32‑91 (MQ=255) GATGATTTATATTCCTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGa > 1:2531688‑M1/1‑91 (MQ=255) GATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCGGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGa > 1:3596945‑M1/1‑91 (MQ=255) GATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGa < 1:3000788‑M1/91‑1 (MQ=255) GATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGa < 1:3000300‑M1/91‑1 (MQ=255) GATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGa > 1:3611696‑M1/1‑91 (MQ=255) GATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGa < 1:1592650‑M1/91‑1 (MQ=255) GATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGa > 1:2770018‑M1/1‑91 (MQ=255) atgataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGAt > 1:3167889‑M2/30‑91 (MQ=255) atgataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGAt > 1:3168074‑M2/30‑91 (MQ=255) atgataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGAt > 1:956268‑M2/30‑91 (MQ=255) atgataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGAt > 1:1795027‑M2/30‑91 (MQ=255) tgataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATg > 1:4119804‑M2/29‑91 (MQ=255) ataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTa > 1:1090802‑M2/27‑91 (MQ=255) ataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTa > 1:1670505‑M2/27‑91 (MQ=255) ataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTa > 1:2332198‑M2/27‑91 (MQ=255) ataacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTa > 1:3273707‑M2/27‑91 (MQ=255) TTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAg > 1:969934‑M1/1‑91 (MQ=255) aacgagtaatataaatcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTagg > 1:523115‑M2/25‑91 (MQ=255) atatTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTaggag < 1:3573798/91‑1 (MQ=255) ttACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGaggca < 1:3498134/91‑1 (MQ=255) tACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGaggcaa < 1:143511/91‑1 (MQ=255) aCTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGaggcaag > 1:3984964/1‑91 (MQ=255) tCGTTATCATCAAGAATGATTGTTATCAGTATTCCGCGATTCGGGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGaggcaaggc < 1:4140834/91‑1 (MQ=255) tCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGaggcaaggc > 1:351261/1‑91 (MQ=255) gTTATCAGCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAggcaatgcaa < 1:3274470/91‑1 (MQ=255) tATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATg > 1:197018/1‑91 (MQ=255) tATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATg < 1:544163/91‑1 (MQ=255) atcatcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGa > 1:224289‑M2/11‑91 (MQ=255) catcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGaaa > 1:2585416‑M2/9‑91 (MQ=255) atcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGaaaa > 1:500345‑M2/8‑91 (MQ=255) atcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGaaaa > 1:2765348‑M2/8‑91 (MQ=255) tcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAAt < 1:33836‑M2/85‑1 (MQ=255) tcaacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAAt > 1:3576302‑M2/7‑91 (MQ=255) aacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAACTGGATGTAGGAGGCAAGGCAATGAAAATGt > 1:571106‑M2/5‑91 (MQ=255) aacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGt < 1:2551627‑M2/87‑1 (MQ=255) aacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGt < 1:2551982‑M2/87‑1 (MQ=255) aacaATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGt < 1:1993155‑M2/87‑1 (MQ=255) caATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGTAc < 1:4022541‑M2/89‑1 (MQ=255) caATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGTAc > 1:279970‑M2/3‑91 (MQ=255) | TTTCATATAGTTCGGTGAATCGCATTTTAAAAGAGTGGGAAAAAGATTCTAAAGGTGTTGATGATTTATATTACTCGTTATCATCAACAATGATTGTTATCAGTATTCCGCGATTCGAGGAGTACATGAAGGCGCGTCATAAAAAATGGATGTAGGAGGCAAGGCAATGAAAATGTAC > USA300TCH1516_ALE/900118‑900295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |