| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 906356 | 145 (1.470) | 10 (0.110) | 6/150 | NT | 7.1% | intergenic (+140/‑44) | USA300HOU_RS04485/USA300HOU_RS04490 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1586025 = | 124 (1.350) | intergenic (‑18/+109) | USA300HOU_RS07770/USA300TCH1516_01451 | hypothetical protein/hypothetical protein | |||||
AAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/906262‑906356‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAATTT > USA300TCH1516_ALE/1586025‑1586114 AAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGGTAAACTTTTATGGAAGGGGGATAACTTGATTTATCCCTTT > 1:207317/1‑91AAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTT < 1:241073/91‑1 AATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTT < 1:501202/91‑1 AATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTT < 1:501067/91‑1 TTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCTTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAA > 1:3501453/1‑91 TTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAA > 1:2496175/1‑91 TTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAA > 1:3573789/1‑91 TTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAA > 1:2496225/1‑91 TTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAA > 1:2366216/1‑91 TATGAAAGGGGGATAACTTGATTTATCCCTTTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAA > 1:2031688/1‑91 TATGAAAGGGGGATAACTTGATTTATCCCTTTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAA > 1:2031575/1‑91 AAGGGGGATAACTTGATTTATCCCTTTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTT > 1:136986/1‑91 GGGGGATAACTTGATTTATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTA > 1:1714475/1‑91 GATAACTTGATTTATCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCC > 1:3393388/1‑91 TTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAA > 1:1540682/1‑91 TCATAAAAGTTTATCCGTGTTGCAAGCGAAGGTGCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAT < 1:3545741/91‑1 TCATAAAAGTTTATCCGTGTTGCAAGCGAAGGACCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAT < 1:3545750/91‑1 TCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAT > 1:2199969/1‑91 TCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAT > 1:2499275/1‑91 CATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAATT > 1:2115110/1‑91 CATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAATT > 1:165491/1‑91 ATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAATTT > 1:307974/1‑91 AAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/906262‑906356‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAATTT > USA300TCH1516_ALE/1586025‑1586114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |