BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 906356	145 (1.470)	10 (0.110)	6/150	NT	7.1%	intergenic (+140/‑44)	USA300HOU_RS04485/USA300HOU_RS04490	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1586025 =	124 (1.350)	10 (0.110)	6/150	NT	7.1%	intergenic (‑18/+109)	USA300HOU_RS07770/USA300TCH1516_01451	hypothetical protein/hypothetical protein

Only 100 of 158 total aligned reads displayed.

AATTAATTAATATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAATTT  >  USA300TCH1516_ALE/1585935‑1586114

aattaattAATATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCAt                                                                                           >  1:1828816/1‑91 (MQ=255)

aattaattAATATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCAt                                                                                           <  1:980218/91‑1 (MQ=255)

aattaattAATATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCAt                                                                                           <  1:1642365/91‑1 (MQ=255)

 attaattaATATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATa                                                                                          <  1:2051086/91‑1 (MQ=255)

 attaattaATATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATa                                                                                          <  1:3896991/91‑1 (MQ=255)

    aattaatATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATaaaa                                                                                       <  1:732052/91‑1 (MQ=255)

     attaatATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAg                                                                                      >  1:330724/1‑91 (MQ=255)

     attaatATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAg                                                                                      >  1:3527994/1‑91 (MQ=255)

      ttaatATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGt                                                                                     >  1:2365639/1‑91 (MQ=255)

      ttaatATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGt                                                                                     >  1:750891/1‑91 (MQ=255)

        aatATGTCATCAGATTTTTTGTAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGttt                                                                                   >  1:1929190/1‑91 (MQ=255)

        aatATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGttt                                                                                   >  1:2331518/1‑91 (MQ=255)

        aatATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGttt                                                                                   >  1:3334391/1‑91 (MQ=255)

        aatATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGttt                                                                                   >  1:2331250/1‑91 (MQ=255)

        aatATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGttt                                                                                   >  1:3175620/1‑91 (MQ=255)

              tcatcaGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTGCATAAAAGTTTATCcgc                                                                             >  1:2050485/1‑91 (MQ=255)

               catcaGATTTTTTATAATTCTCTATATATTCTTTCAGCTGTCTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCcgcg                                                                            >  1:3599039/1‑91 (MQ=255)

                      ttttttATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAg                                                                     <  1:3511747/91‑1 (MQ=255)

                       tttttATCATACTCTATATATTCTTTCAGCTGTTTTTTTGTTAAATTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGc                                                                    >  1:1302367/1‑91 (MQ=255)

                       tttttATAATCCGCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGc                                                                    >  1:3190996/1‑91 (MQ=255)

                          ttATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGaa                                                                 >  1:3063728/1‑91 (MQ=255)

                          ttATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGaa                                                                 >  1:1223702/1‑91 (MQ=255)

                            ataATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAgg                                                               <  1:2216905/91‑1 (MQ=255)

                            ataATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAgg                                                               >  1:24401/1‑91 (MQ=255)

                            ataATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAgg                                                               >  1:19804/1‑91 (MQ=255)

                             tactCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAggg                                                              >  1:109596/4‑91 (MQ=255)

                             taATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAggg                                                              >  1:109738/1‑91 (MQ=255)

                              aaTCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGc                                                             >  1:1523310/1‑91 (MQ=255)

                              aaTCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGc                                                             >  1:3430986/1‑91 (MQ=255)

                                  ctctATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGccccc                                                         >  1:194761/1‑91 (MQ=255)

                                  ctctATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGccccc                                                         >  1:2284423/1‑91 (MQ=255)

                                     tatataTTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCtcgcc                                                      <  1:3280627/91‑1 (MQ=255)

                                     tatataTTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCccgcc                                                      >  1:569088/1‑91 (MQ=255)

                                     tatataTTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCccgcc                                                      >  1:787780/1‑91 (MQ=255)

                                      atatatTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCctgccg                                                     >  1:3452725/1‑91 (MQ=255)

                                      atatatTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCccgccg                                                     >  1:3834049/1‑91 (MQ=255)

                                         tatTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTa                                                  <  1:877655/91‑1 (MQ=255)

                                          atTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTAc                                                 <  1:84687/91‑1 (MQ=255)

                                          atTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTAc                                                 <  1:2901294/91‑1 (MQ=255)

                                           ttCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCgggtac                                                <  1:2956725/91‑5 (MQ=255)

                                             cTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCg                                              <  1:2141798/91‑1 (MQ=255)

                                             cTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCg                                              >  1:441590/1‑91 (MQ=255)

                                             cTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCg                                              >  1:441719/1‑91 (MQ=255)

                                               ttCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGc                                            >  1:1938538/1‑91 (MQ=255)

                                                tCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCg                                           >  1:4028848/1‑91 (MQ=255)

                                                tCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCg                                           >  1:1515420/1‑91 (MQ=255)

                                                 cAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGa                                          <  1:1777722/91‑1 (MQ=255)

                                                  aGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaa                                         <  1:2136444/91‑1 (MQ=255)

                                                   gCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaa                                        >  1:2920267/1‑91 (MQ=255)

                                                   gCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaa                                        >  1:1256165/1‑91 (MQ=255)

                                                   gCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaa                                        >  1:1393641/1‑91 (MQ=255)

                                                    cTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaa                                       >  1:2534974/1‑91 (MQ=255)

                                                    cTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaa                                       >  1:2804020/1‑91 (MQ=255)

                                                    cTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaa                                       >  1:1919711/1‑91 (MQ=255)

                                                     ttatgaaagggggataacttgatttatccctttttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaaa                                      >  1:2366216‑M2/38‑91 (MQ=255)

                                                     ttatgaaagggggataacttgatttatccctttttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaaa                                      >  1:2496225‑M2/38‑91 (MQ=255)

                                                     tgtgTTTTTGTAAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaaa                                      <  1:3734322/91‑1 (MQ=255)

                                                     tGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaaa                                      <  1:2865401/91‑1 (MQ=255)

                                                      tatgaaagggggataacttgatttatccctttttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaaaa                                     >  1:2031575‑M2/37‑91 (MQ=255)

                                                      tatgaaagggggataacttgatttatccctttttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaaaa                                     >  1:2031688‑M2/37‑91 (MQ=255)

                                                      gtttgtttGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaaaa                                     <  1:3449804/91‑1 (MQ=255)

                                                      gTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGaaaaaa                                     <  1:3821894/91‑1 (MQ=255)

                                                        ttttttGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACa                                   >  1:1292779/1‑91 (MQ=255)

                                                         tttttGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACAt                                  >  1:623494/1‑91 (MQ=255)

                                                           aagggggataacttgatttatccctttttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACAttt                                >  1:136986‑M2/32‑91 (MQ=255)

                                                             tGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTa                              >  1:3911714/1‑91 (MQ=255)

                                                             tGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTa                              >  1:3984056/1‑91 (MQ=255)

                                                             gggggataacttgatttatccccctttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTa                              >  1:1714475‑M2/30‑91 (MQ=255)

                                                              gTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTaa                             >  1:612248/1‑91 (MQ=255)

                                                                tAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGc                           <  1:962274/91‑1 (MQ=255)

                                                                tAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGc                           >  1:1087489/1‑91 (MQ=255)

                                                                 gataacttgatttatccccctttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGcc                          >  1:3393388‑M2/26‑91 (MQ=255)

                                                                   tttCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCaa                        <  1:300741/91‑1 (MQ=255)

                                                                     tCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATg                      <  1:2728107/91‑1 (MQ=255)

                                                                     tCATATAAAGACCCCCTTTCATAAAAGTTTAACCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATg                      <  1:1054355/91‑1 (MQ=255)

                                                                      cATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATgg                     <  1:219594/91‑1 (MQ=255)

                                                                      cATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATgg                     <  1:219619/91‑1 (MQ=255)

                                                                      cATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATgg                     <  1:220166/91‑1 (MQ=255)

                                                                       atatAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTACAAGCGAAGGGCCTCCGCCGGTACCCGTCGAAAAAACATTTTAAGCCGATggg                    >  1:3864210/1‑91 (MQ=11)

                                                                        tataAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGc                   >  1:840497/1‑91 (MQ=255)

                                                                        tataAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGc                   >  1:2280802/1‑91 (MQ=255)

                                                                        tataAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGc                   >  1:2281200/1‑91 (MQ=255)

                                                                            aaGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAggg               <  1:811260/91‑1 (MQ=39)

                                                                             aGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCGCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAgggg              <  1:3289676/91‑1 (MQ=255)

                                                                             aGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAgggg              <  1:989821/91‑1 (MQ=38)

                                                                              gACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAggggg             >  1:2754060/1‑91 (MQ=37)

                                                                              gACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAggggg             >  1:1404218/1‑91 (MQ=37)

                                                                               aCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGc            <  1:2805490/91‑1 (MQ=34)

                                                                               aCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGc            <  1:1209169/91‑1 (MQ=35)

                                                                               aCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGc            <  1:1209075/91‑1 (MQ=35)

                                                                                cccccTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCt           >  1:2513517/1‑91 (MQ=33)

                                                                                 ccccTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCta          <  1:2630694/91‑1 (MQ=34)

                                                                                 ccccTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCta          <  1:3835111/91‑1 (MQ=33)

                                                                                      ttcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATaaaa     >  1:1540682‑M2/5‑91 (MQ=255)

                                                                                       tcaTAAAAGTTTATCCGTGTTGCAAGCGAAGGTGCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAt    <  1:3545741‑M2/88‑1 (MQ=255)

                                                                                       tcaTAAAAGTTTATCCGTGTTGCAAGCGAAGGACCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAt    <  1:3545750‑M2/88‑1 (MQ=255)

                                                                                       tcaTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAt    >  1:2499275‑M2/4‑91 (MQ=255)

                                                                                        caTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAtt   >  1:2115110‑M2/3‑91 (MQ=255)

                                                                                        caTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAtt   >  1:165491‑M2/3‑91 (MQ=255)

                                                                                         aTAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAAttt  >  1:307974‑M2/2‑91 (MQ=255)

AATTAATTAATATGTCATCAGATTTTTTATAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCGCCGGTACCCGGCGAAAAAACATTTTAAGCCAATGGGCAGGGGGCTATAAAATTT  >  USA300TCH1516_ALE/1585935‑1586114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.