BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 906356	145 (1.470)	10 (0.110)	6/150	NT	7.1%	intergenic (+140/‑44)	USA300HOU_RS04485/USA300HOU_RS04490	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1586025 =	124 (1.350)	10 (0.110)	6/150	NT	7.1%	intergenic (‑18/+109)	USA300HOU_RS07770/USA300TCH1516_01451	hypothetical protein/hypothetical protein

Only 100 of 184 total aligned reads displayed.

GTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGTAGAACT  >  USA300TCH1516_ALE/906267‑906446

gTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAg                                                                                           <  1:3809708/91‑1 (MQ=255)

gTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAg                                                                                           >  1:2571506/1‑91 (MQ=255)

 ttttttCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGa                                                                                          <  1:2026254/91‑1 (MQ=255)

 ttttttCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGa                                                                                          <  1:2506986/91‑1 (MQ=255)

   ttttCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATa                                                                                        <  1:2227360/91‑1 (MQ=255)

   ttttCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATa                                                                                        >  1:3817399/1‑91 (MQ=255)

    tttCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATAc                                                                                       >  1:103074/1‑91 (MQ=255)

     cccGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACt                                                                                      >  1:1361565/3‑91 (MQ=255)

      tCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACtt                                                                                     <  1:1337871/91‑1 (MQ=255)

       cGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTta                                                                                    <  1:1283318/91‑1 (MQ=255)

         ccGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTtata                                                                                  >  1:677557/1‑91 (MQ=255)

          cGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATaa                                                                                 <  1:1323076/91‑1 (MQ=255)

          cGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATaa                                                                                 >  1:1566896/1‑91 (MQ=255)

           gggTACCGGCGGGGGCCCTTCGCTTGCAACGCGGTTAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATaaa                                                                                <  1:2640416/91‑1 (MQ=255)

           gggTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATaaa                                                                                <  1:2112378/91‑1 (MQ=255)

           gggTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATaaa                                                                                <  1:1209355/91‑1 (MQ=255)

           gggTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATaaa                                                                                >  1:3635643/1‑91 (MQ=255)

            gtacccGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAat                                                                               >  1:1797000/5‑91 (MQ=255)

            ggTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAat                                                                               <  1:717955/91‑1 (MQ=255)

            ggTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAat                                                                               <  1:1810426/91‑1 (MQ=255)

            ggTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAat                                                                               >  1:827891/1‑91 (MQ=255)

                 cggcggGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTaa                                                                          >  1:644875/1‑91 (MQ=255)

                 cggcggGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTaa                                                                          >  1:317948/1‑91 (MQ=255)

                 cggcggGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTaa                                                                          <  1:2422299/91‑1 (MQ=255)

                  ggcggGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTaaa                                                                         >  1:3525815/1‑91 (MQ=255)

                   gcggGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAAt                                                                        <  1:1705848/91‑1 (MQ=255)

                     gggggcCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTc                                                                      <  1:3576864‑M2/85‑1 (MQ=255)

                                gCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAg                                                           >  1:3695273/1‑91 (MQ=255)

                                  ttGCGACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGgt                                                         <  1:138454/91‑1 (MQ=255)

                                  ttGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGgt                                                         <  1:1495263/91‑1 (MQ=255)

                                   tGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGgtg                                                        <  1:3808821/91‑1 (MQ=255)

                                    gCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGgtgt                                                       <  1:3253311/91‑1 (MQ=255)

                                    gCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGgtgt                                                       <  1:3253442/91‑1 (MQ=255)

                                    gCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGgtgt                                                       >  1:3128287/1‑91 (MQ=255)

                                    gCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGgtgt                                                       >  1:1500982/1‑91 (MQ=255)

                                      aaCGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTgg                                                     <  1:2599499/91‑1 (MQ=255)

                                      aaCGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTgg                                                     <  1:1630472/91‑1 (MQ=255)

                                        cgcgGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGtt                                                   <  1:2275136/91‑1 (MQ=255)

                                        cgcgGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGtt                                                   <  1:3603223/91‑1 (MQ=255)

                                        cgcgGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGtt                                                   >  1:3982363/1‑91 (MQ=255)

                                          cgGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTAt                                                 >  1:2048564/1‑91 (MQ=255)

                                          cgGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTAt                                                 >  1:988842/1‑91 (MQ=255)

                                          cgGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTAt                                                 >  1:2800772/1‑91 (MQ=255)

                                          cgGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTAt                                                 >  1:2728566/1‑91 (MQ=255)

                                          cgGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTAt                                                 >  1:2137664/1‑91 (MQ=255)

                                          cgGATAAACTTTTACGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTAt                                                 <  1:2848951/91‑1 (MQ=255)

                                             aTAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTg                                              <  1:2495933/91‑1 (MQ=255)

                                              tAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTgg                                             <  1:1533527/91‑1 (MQ=255)

                                                 aCTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTAt                                          >  1:3924009/1‑91 (MQ=255)

                                                  cTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATc                                         >  1:1149861/1‑91 (MQ=255)

                                                     ttATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAtaaaagtttatccgcgttgcaagcgaagggcccccgccggtacccggcgaaaaa                                      >  1:2496225‑M1/1‑37 (MQ=255)

                                                     ttATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAtaaaagtttatccgcgttgcaagcgaagggcccccgccggtacccggcgaaaaa                                      >  1:2366216‑M1/1‑37 (MQ=255)

                                                     ttATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGa                                      <  1:3953188/91‑1 (MQ=255)

                                                     ttATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGa                                      <  1:2703652/91‑1 (MQ=255)

                                                      tATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAtaaaagtttatccgcgttgcaagcgaagggcccccgccggtacccggcgaaaaaa                                     >  1:2031688‑M1/1‑36 (MQ=255)

                                                      tATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGAc                                     >  1:2373101/1‑91 (MQ=255)

                                                       aTGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACt                                    <  1:3789432/91‑1 (MQ=255)

                                                        tGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACtt                                   <  1:700984/91‑1 (MQ=255)

                                                        tGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACtt                                   <  1:104628/91‑1 (MQ=255)

                                                         gAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGTTTATTTGGTATCTGACttt                                  >  1:1036922/1‑91 (MQ=255)

                                                          aaaGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTg                                 <  1:58477/91‑1 (MQ=255)

                                                           aaGGGGGATAACTTGATTTATCCCTTTTTCAtaaaagtttatccgcgttgcaagcgaagggcccccgccggtacccggcgaaaaaacattt                                >  1:136986‑M1/1‑31 (MQ=255)

                                                            aGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGaa                               >  1:3006353/1‑91 (MQ=255)

                                                             gggggATAACTTGATTTATCCCCCTTTCAtaaaagtttatccgcgttgcaagcgaagggcccccgccggtacccggcgaaaaaacatttta                              >  1:1714475‑M1/1‑29 (MQ=255)

                                                                ggATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCa                           <  1:544610/91‑1 (MQ=255)

                                                                 gATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCaa                          <  1:1888836/91‑1 (MQ=255)

                                                                 gATAACTTGATTTATCCCCCTTTCAtaaaagtttatccgcgttgcaagcgaagggcccccgccggtacccggcgaaaaaacattttaagcc                          >  1:3393388‑M1/1‑25 (MQ=255)

                                                                   tAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATg                        <  1:3996526/91‑1 (MQ=255)

                                                                   tAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATg                        >  1:3950275/1‑91 (MQ=255)

                                                                   tAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATg                        <  1:510910/91‑1 (MQ=255)

                                                                    aaCTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGa                       <  1:1367243/91‑1 (MQ=255)

                                                                    aaCTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGa                       <  1:4088168/91‑1 (MQ=255)

                                                                      cTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATa                     <  1:2211599/91‑1 (MQ=255)

                                                                       ttGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATaa                    >  1:3780599/1‑91 (MQ=255)

                                                                       ttGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATaa                    <  1:4059285/91‑1 (MQ=255)

                                                                        tGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATaaa                   <  1:757759/91‑1 (MQ=255)

                                                                        tGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATaaa                   <  1:1656218/91‑1 (MQ=255)

                                                                         gATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATaaaa                  >  1:506328/1‑91 (MQ=255)

                                                                         gATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATaaaa                  >  1:3380616/1‑91 (MQ=255)

                                                                          aTTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAAt                 <  1:3809964/91‑1 (MQ=255)

                                                                          aTTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTCGTATCTGACTTTGAAAGCAATGATAAAAt                 >  1:3331439/1‑91 (MQ=255)

                                                                              aTCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACt             <  1:528024/91‑1 (MQ=255)

                                                                               tCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTg            >  1:155400/1‑91 (MQ=255)

                                                                               tCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTg            >  1:1790191/1‑91 (MQ=255)

                                                                                cccTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGa           >  1:1095376/1‑91 (MQ=255)

                                                                                cccTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAAAGATAAAATCACTGa           >  1:2564944/1‑91 (MQ=255)

                                                                                  cTTTTTCAGATACTTATAAATATTAAATTCGATATGTCAAGGTGTGGTTATCTGGTATCTGACTTAGAAAGCAATGATAAAATCAGTGAAg         >  1:3857753/1‑91 (MQ=255)

                                                                                  cTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAg         <  1:2992062/91‑1 (MQ=255)

                                                                                   tttttCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGt        >  1:2661030/1‑91 (MQ=255)

                                                                                   tttttCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGt        <  1:1201780/91‑1 (MQ=255)

                                                                                   tttttCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGt        >  1:1124853/1‑91 (MQ=255)

                                                                                    ttttCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGTa       >  1:2377112/1‑91 (MQ=255)

                                                                                    ttttCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGTa       <  1:2548902/91‑1 (MQ=255)

                                                                                     tttCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGTAg      >  1:919113/1‑91 (MQ=255)

                                                                                      ttCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCAGTGAAGTAGa     >  1:3721802/1‑91 (MQ=255)

                                                                                       tCAtaaaagtttatccgtgttgcaagcgaaggacccccgccggtacccggcgaaaaaacattttaagccaatgggcagggggctataaaat    <  1:3545750‑M1/91‑89 (MQ=255)

                                                                                        cAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGTAGAAc   <  1:1729431/91‑1 (MQ=255)

                                                                                        cAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGTAGAAc   <  1:2664457/91‑1 (MQ=255)

                                                                                        cAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGTAGAAc   <  1:2669063/91‑1 (MQ=255)

                                                                                         ataaaagtttatccgcgttgcaagcgaagggcccccgccggtacccggcgaaaaaacattttaagccaatgggcagggggctataaaattt  >  1:307974‑M1/1‑1 (MQ=255)

GTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGATAACTTGATTTATCCCTTTTTCAGATACTTATAAATATTAAATTCGATATGTAAAGGTGTGGTTATTTGGTATCTGACTTTGAAAGCAATGATAAAATCACTGAAGTAGAACT  >  USA300TCH1516_ALE/906267‑906446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.