| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 920690 | 71 (0.720) | 8 (0.090) | 5/138 | NT | 11.2% | coding (107/849 nt) | USA300HOU_RS04565 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 920717 | 66 (0.780) | coding (134/849 nt) | USA300HOU_RS04565 | hypothetical protein | |||||
ACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/920591‑920690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccggttgtATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCTTCA < USA300TCH1516_ALE/920717‑920631 ACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTT > 1:1444621/1‑91ACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTT > 1:321203/1‑91ACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTT > 1:1809421/1‑91ACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTT > 1:1809480/1‑91ACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTT < 1:2302307/91‑1 ATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTC > 1:832199/1‑91 TCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCC > 1:1316704/1‑91 TCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCC > 1:1316970/1‑91 TCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCC > 1:2503749/1‑91 TCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCC < 1:355312/91‑1 CGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCG < 1:1869148/91‑1 CGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCG < 1:2406521/91‑1 CGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCG > 1:3843858/1‑91 GGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGG < 1:3221125/91‑1 GGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGG > 1:441254/1‑91 GATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGT < 1:835224/91‑1 GATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGT > 1:3153089/1‑91 GATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGT < 1:27043/91‑1 TATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTATCGCATAGTATGTCGCATCTAATTCGAC < 1:2884724/91‑1 TATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTATCGCATAGTATGTCGCATCTAATTCGAC < 1:3686939/91‑1 TATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTATCGCATAGTATGTCGCATCTAATTCGAC < 1:3336028/91‑1 ATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTATCGCATAGTATGTCGCATCTAATTCGACA < 1:1108015/91‑1 TTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAA < 1:3397285/91‑1 AACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCAT < 1:3417299/91‑1 AAACTTAAAACATATGCTGGACATTTTCCGGTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTT < 1:2395089/91‑1 AAACTTAAAACATATGCTGGACATTTTCCGGTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTT < 1:2394870/91‑1 CGGTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCT < 1:2948225/91‑1 CGGTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCT < 1:1671850/91‑1 GGTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCTT < 1:4044806/91‑1 GTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCTTC > 1:2864878/1‑91 GTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCTTC > 1:2864908/1‑91 GTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCTTC > 1:137737/1‑91 GTTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCTTC > 1:2864980/1‑91 TTGTATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCTTCA < 1:3284579/91‑1 ACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/920591‑920690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccggttgtATCGCATAGTATGTCGCATCTAATTCGACAACCGGAAAATGTCCAGCATATGTTTTAAGTTTATCGGTTTGGCGTTCTAAATCTTCA < USA300TCH1516_ALE/920717‑920631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |