| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 920690 | 71 (0.720) | 8 (0.090) | 5/138 | NT | 11.2% | coding (107/849 nt) | USA300HOU_RS04565 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 920717 | 66 (0.780) | coding (134/849 nt) | USA300HOU_RS04565 | hypothetical protein | |||||
TGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTCACATTGCA > USA300TCH1516_ALE/920631‑920807 | tGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaa < 1:3284579‑M2/91‑5 (MQ=255) gAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaac > 1:2864878‑M2/1‑86 (MQ=255) gAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaac > 1:2864908‑M2/1‑86 (MQ=255) gAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaac > 1:137737‑M2/1‑86 (MQ=255) gAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaac > 1:2864980‑M2/1‑86 (MQ=255) aaGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaacc < 1:4044806‑M2/91‑7 (MQ=255) aGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccg < 1:2948225‑M2/91‑8 (MQ=255) aGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccg < 1:1671850‑M2/91‑8 (MQ=255) tAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaag > 1:3276115/1‑91 (MQ=255) gAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGaaaagaa > 1:1768146/1‑91 (MQ=255) gAACGCCAAACAGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGGCATACTATGCGATAAAACCGgaaagaa > 1:1986834/1‑91 (MQ=255) aaCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaagaaa > 1:2923420/1‑91 (MQ=255) aaCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaagaaa > 1:2921534/1‑91 (MQ=255) aaCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaagaaa > 1:2921258/1‑91 (MQ=255) aaCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaagaaa > 1:4035865/1‑91 (MQ=255) aCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAat < 1:3491883/91‑1 (MQ=255) gCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatat > 1:504296/1‑91 (MQ=255) gCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatat > 1:504273/1‑91 (MQ=255) ccAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatata > 1:492114/1‑91 (MQ=255) cAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatatat > 1:2244889/1‑91 (MQ=255) cAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatatat > 1:2312476/1‑91 (MQ=255) aaaCCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATAtt < 1:2383591/91‑1 (MQ=255) ccGATAAACTTAAAACATATGCTGGACATTTTCCGGTGGTCGAATTAGATGCGACATACTATGAGATACAACCGGAAAGAAATATATTGaa > 1:3517458/1‑91 (MQ=255) aaCTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGAt > 1:248475/1‑91 (MQ=255) ttAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATaaa < 1:3978453/91‑1 (MQ=255) ttAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATaaa < 1:3979398/91‑1 (MQ=255) tAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATaaaa > 1:2478050/1‑91 (MQ=255) aaaaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagttt < 1:2395089‑M2/91‑36 (MQ=255) aaaaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagttt < 1:2394870‑M2/91‑36 (MQ=255) aaaaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAg < 1:319193/91‑1 (MQ=255) aaaaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAg < 1:998880/91‑1 (MQ=255) aaaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGa > 1:3179831/1‑91 (MQ=255) aaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGaa < 1:875960/91‑1 (MQ=255) cATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAAc < 1:2054454/91‑1 (MQ=255) atatGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACg > 1:1689462/1‑91 (MQ=255) atatGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACg > 1:1689520/1‑91 (MQ=255) atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtt < 1:3417299‑M2/91‑43 (MQ=255) atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc < 1:1056439/91‑1 (MQ=255) atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc < 1:1056467/91‑1 (MQ=255) atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc > 1:1283565/1‑91 (MQ=255) atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc < 1:1056452/91‑1 (MQ=255) atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc > 1:2160294/1‑91 (MQ=255) tGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCt < 1:1710026/91‑1 (MQ=255) tGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCt < 1:1509559/91‑1 (MQ=255) aCATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACa < 1:819642/91‑1 (MQ=255) cATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACAt < 1:2423065/91‑1 (MQ=255) aTTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACAtt > 1:610825/1‑91 (MQ=255) tttCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTg > 1:3292805/1‑91 (MQ=255) ttCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaa < 1:3397285‑M2/91‑55 (MQ=255) ttCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGa > 1:1905902/1‑91 (MQ=255) ttCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGa > 1:618049/1‑91 (MQ=255) ttCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGa > 1:991869/1‑91 (MQ=255) tCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGaa < 1:508307/91‑1 (MQ=255) tCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGaa > 1:3830789/1‑91 (MQ=255) ccGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAAt > 1:2216663/1‑91 (MQ=255) cGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAAtt > 1:3166709/1‑91 (MQ=255) cGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAAtt > 1:1549876/1‑91 (MQ=255) cGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAAtt > 1:1526584/1‑91 (MQ=255) gTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTtg < 1:3678290/91‑1 (MQ=255) tGTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttcat < 1:1108015‑M2/91‑62 (MQ=255) tGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTtgtg < 1:1863595/91‑1 (MQ=255) gTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttcata < 1:3336028‑M2/91‑63 (MQ=255) gTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttcata < 1:3686939‑M2/91‑63 (MQ=255) gTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttcata < 1:2884724‑M2/91‑63 (MQ=255) gTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTgg < 1:982497/91‑1 (MQ=255) gTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTgg < 1:982650/91‑1 (MQ=255) tCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGt < 1:3936548/91‑1 (MQ=255) cGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTc < 1:2191274/91‑1 (MQ=255) cGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTc < 1:1716798/91‑1 (MQ=255) aaTTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCaa < 1:2050049/91‑1 (MQ=255) aTTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCaaa > 1:3020097/1‑91 (MQ=255) ttAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCaaaa < 1:3257949/91‑1 (MQ=255) aGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAAtt < 1:2974644/91‑1 (MQ=255) aGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAAtt < 1:188282/91‑1 (MQ=255) aTGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATtca < 1:4115857/91‑1 (MQ=255) tGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATtcat > 1:2953100/1‑91 (MQ=255) gCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATtcatc > 1:166071/1‑91 (MQ=255) cGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATtcatca > 1:335308/1‑91 (MQ=255) cGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATtcatca > 1:335283/1‑91 (MQ=255) cGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATtcatca > 1:2910310/1‑91 (MQ=255) gACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCaa > 1:4092707/1‑91 (MQ=255) tACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCAc < 1:2461872/91‑1 (MQ=255) aCTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACCTTTGAATTTGTGGTCAAAATTCATCAATCACt > 1:2284801/1‑91 (MQ=255) aCTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACt > 1:1337011/1‑91 (MQ=255) cTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTc < 1:1553270/91‑1 (MQ=255) aTGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTcac > 1:633909/1‑91 (MQ=255) tGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTcaca > 1:2370163/1‑91 (MQ=255) tGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTcaca > 1:850517/1‑91 (MQ=255) tGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTcaca < 1:2992303/91‑1 (MQ=255) tGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCAGCAAGCACTcaca < 1:3209334/91‑1 (MQ=255) tACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTCACATtgca < 1:3562447/91‑1 (MQ=255) | TGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTCACATTGCA > USA300TCH1516_ALE/920631‑920807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |