BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 920690	71 (0.720)	8 (0.090)	5/138	NT	11.2%	coding (107/849 nt)	USA300HOU_RS04565	hypothetical protein
*	?	USA300TCH1516_ALE	= 920717	66 (0.780)	8 (0.090)	5/138	NT	11.2%	coding (134/849 nt)	USA300HOU_RS04565	hypothetical protein

Only 100 of 115 total aligned reads displayed.

AACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGT  >  USA300TCH1516_ALE/920601‑920780

aaCAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTc                                                                                           >  1:776880/1‑91 (MQ=255)

 aCAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCg                                                                                          >  1:2834515/1‑91 (MQ=255)

  cAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGa                                                                                         >  1:2362755/1‑91 (MQ=255)

  cAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGa                                                                                         <  1:534757/91‑1 (MQ=255)

     gTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAAtt                                                                                      >  1:286023/1‑91 (MQ=255)

     gTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAAtt                                                                                      >  1:2165464/1‑91 (MQ=255)

      ttGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTa                                                                                     >  1:1210654/1‑91 (MQ=255)

      ttGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTa                                                                                     >  1:232519/1‑91 (MQ=255)

       tGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAg                                                                                    >  1:2886140/1‑91 (MQ=255)

        ggggTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGa                                                                                   <  1:937493/91‑1 (MQ=255)

        ggggTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGa                                                                                   <  1:721656/91‑1 (MQ=255)

        ggggTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGa                                                                                   <  1:1745808/91‑1 (MQ=255)

        ggggTGATCACTATTCATTATATGAAGATCTTGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGa                                                                                   <  1:3320138/91‑1 (MQ=255)

          ggTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATg                                                                                 >  1:280113/1‑91 (MQ=255)

           gTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGc                                                                                >  1:3668174/1‑91 (MQ=255)

            tGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCg                                                                               >  1:2455602/1‑91 (MQ=255)

             gATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAGCTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGa                                                                              <  1:3299721/91‑1 (MQ=255)

             gATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAGCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGa                                                                              <  1:727845/91‑1 (MQ=255)

             gATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGa                                                                              <  1:3956609/91‑1 (MQ=255)

              aTCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGAc                                                                             <  1:3437248/91‑1 (MQ=255)

              aTCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGAc                                                                             <  1:2037370/91‑1 (MQ=255)

              aTCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGAc                                                                             >  1:4128211/1‑91 (MQ=255)

              aTCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGAc                                                                             <  1:2252808/91‑1 (MQ=255)

               tCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACa                                                                            >  1:2134423/1‑91 (MQ=255)

                cACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACAt                                                                           >  1:1482165/1‑91 (MQ=255)

                    aTTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTa                                                                       <  1:430411/91‑1 (MQ=255)

                     ttCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTAt                                                                      >  1:3478812/1‑91 (MQ=255)

                            tatGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTatcgcatagtatgtcgcatctaattcgac                                                               <  1:3336028‑M1/91‑30 (MQ=255)

                            tatGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTatcgcatagtatgtcgcatctaattcgac                                                               <  1:2884724‑M1/91‑30 (MQ=255)

                             atGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTatcgcatagtatgtcgcatctaattcgaca                                                              <  1:1108015‑M1/91‑31 (MQ=255)

                               gAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaac                                                            >  1:2864908‑M2/1‑86 (MQ=255)

                               gAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaac                                                            >  1:137737‑M2/1‑86 (MQ=255)

                               gAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaac                                                            >  1:2864878‑M2/1‑86 (MQ=255)

                               gAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaac                                                            >  1:2864980‑M2/1‑86 (MQ=255)

                                aaGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaacc                                                           <  1:4044806‑M2/91‑7 (MQ=255)

                                 aGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccg                                                          <  1:2948225‑M2/91‑8 (MQ=255)

                                    tttAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTatcgcatagtatgtcgcatctaattcgacaaccggaa                                                       <  1:3397285‑M1/91‑38 (MQ=255)

                                      tAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaag                                                     >  1:3276115/1‑91 (MQ=255)

                                        gAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGaaaagaa                                                   >  1:1768146/1‑91 (MQ=255)

                                        gAACGCCAAACAGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGGCATACTATGCGATAAAACCGgaaagaa                                                   >  1:1986834/1‑91 (MQ=255)

                                         aaCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaagaaa                                                  >  1:4035865/1‑91 (MQ=255)

                                         aaCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaagaaa                                                  >  1:2923420/1‑91 (MQ=255)

                                         aaCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaagaaa                                                  >  1:2921534/1‑91 (MQ=255)

                                         aaCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaagaaa                                                  >  1:2921258/1‑91 (MQ=255)

                                          aCGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAat                                                 <  1:3491883/91‑1 (MQ=255)

                                            gCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatat                                               >  1:504273/1‑91 (MQ=255)

                                             ccAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatata                                              >  1:492114/1‑91 (MQ=255)

                                              cAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatatat                                             >  1:2312476/1‑91 (MQ=255)

                                              cAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatatat                                             >  1:2244889/1‑91 (MQ=255)

                                               aaaCCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATAtt                                            <  1:2383591/91‑1 (MQ=255)

                                                  ccGATAAACTTAAAACATATGCTGGACATTTTCCGGTGGTCGAATTAGATGCGACATACTATGAGATACAACCGGAAAGAAATATATTGaa                                         >  1:3517458/1‑91 (MQ=255)

                                                       aaaCTTAAAACATATGCTGGACATTTTCCGGTTGTatcgcatagtatgtcgcatctaattcgacaaccggaaaatgtccagcatatgtttt                                    <  1:2394870‑M1/91‑57 (MQ=255)

                                                       aaaCTTAAAACATATGCTGGACATTTTCCGGTTGTatcgcatagtatgtcgcatctaattcgacaaccggaaaatgtccagcatatgtttt                                    <  1:2395089‑M1/91‑57 (MQ=255)

                                                        aaCTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGAt                                   >  1:248475/1‑91 (MQ=255)

                                                           ttAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATaaa                                <  1:3979398/91‑1 (MQ=255)

                                                           ttAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATaaa                                <  1:3978453/91‑1 (MQ=255)

                                                            tAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATaaaa                               >  1:2478050/1‑91 (MQ=255)

                                                             aaaaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagttt                              <  1:2395089‑M2/91‑36 (MQ=255)

                                                             aaaaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAg                              <  1:319193/91‑1 (MQ=255)

                                                              aaaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGa                             >  1:3179831/1‑91 (MQ=255)

                                                               aaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGaa                            <  1:875960/91‑1 (MQ=255)

                                                                 cATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAAc                          <  1:2054454/91‑1 (MQ=255)

                                                                  atatGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACg                         >  1:1689520/1‑91 (MQ=255)

                                                                  atatGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACg                         >  1:1689462/1‑91 (MQ=255)

                                                                    atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtt                       <  1:3417299‑M2/91‑43 (MQ=255)

                                                                    atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc                       <  1:1056452/91‑1 (MQ=255)

                                                                    atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc                       <  1:1056439/91‑1 (MQ=255)

                                                                    atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc                       <  1:1056467/91‑1 (MQ=255)

                                                                    atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc                       >  1:1283565/1‑91 (MQ=255)

                                                                    atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGcc                       >  1:2160294/1‑91 (MQ=255)

                                                                     tGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCt                      <  1:1509559/91‑1 (MQ=255)

                                                                     tGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCt                      <  1:1710026/91‑1 (MQ=255)

                                                                           aCATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACa                <  1:819642/91‑1 (MQ=255)

                                                                            cATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACAt               <  1:2423065/91‑1 (MQ=255)

                                                                             aTTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACAtt              >  1:610825/1‑91 (MQ=255)

                                                                               tttCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTg            >  1:3292805/1‑91 (MQ=255)

                                                                                ttCCGGTTGTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaa           <  1:3397285‑M2/91‑55 (MQ=255)

                                                                                ttCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGa           >  1:991869/1‑91 (MQ=255)

                                                                                ttCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGa           >  1:618049/1‑91 (MQ=255)

                                                                                 tCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGaa          <  1:508307/91‑1 (MQ=255)

                                                                                 tCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGaa          >  1:3830789/1‑91 (MQ=255)

                                                                                  ccGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAAt         >  1:2216663/1‑91 (MQ=255)

                                                                                   cGGTTGTatcgcatagtatgtcgcatctaattcgacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatct        <  1:1671850‑M1/91‑85 (MQ=255)

                                                                                   cGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAAtt        >  1:1549876/1‑91 (MQ=255)

                                                                                   cGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAAtt        >  1:1526584/1‑91 (MQ=255)

                                                                                   cGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAAtt        >  1:3166709/1‑91 (MQ=255)

                                                                                    ggTTGTatcgcatagtatgtcgcatctaattcgacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatctt       <  1:4044806‑M1/91‑86 (MQ=255)

                                                                                     gTTGTatcgcatagtatgtcgcatctaattcgacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttc      >  1:2864878‑M1/1‑5 (MQ=255)

                                                                                     gTTGTatcgcatagtatgtcgcatctaattcgacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttc      >  1:137737‑M1/1‑5 (MQ=255)

                                                                                     gTTGTatcgcatagtatgtcgcatctaattcgacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttc      >  1:2864908‑M1/1‑5 (MQ=255)

                                                                                     gTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTtg      <  1:3678290/91‑1 (MQ=255)

                                                                                      ttGTatcgcatagtatgtcgcatctaattcgacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttca     <  1:3284579‑M1/91‑88 (MQ=255)

                                                                                       tGTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttcat    <  1:1108015‑M2/91‑62 (MQ=255)

                                                                                       tGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTtgtg    <  1:1863595/91‑1 (MQ=255)

                                                                                        gTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttcata   <  1:3336028‑M2/91‑63 (MQ=255)

                                                                                        gTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttcata   <  1:2884724‑M2/91‑63 (MQ=255)

                                                                                        gTCGAATTAGATGCGACATACTATGCGATacaaccggaaaatgtccagcatatgttttaagtttatcggtttggcgttctaaatcttcata   <  1:3686939‑M2/91‑63 (MQ=255)

                                                                                        gTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTgg   <  1:982497/91‑1 (MQ=255)

                                                                                        gTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTgg   <  1:982650/91‑1 (MQ=255)

                                                                                         tCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGt  <  1:3936548/91‑1 (MQ=255)

AACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGT  >  USA300TCH1516_ALE/920601‑920780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.