| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 933411 | 69 (0.700) | 24 (0.300) | 13/130 | NT | 27.0% | intergenic (+28/+31) | USA300HOU_RS04645/yjlD | hypothetical protein/NADH dehydrogenase‑like protein YjlD |
| ? | USA300TCH1516_ALE | = 933421 | 74 (0.930) | intergenic (+38/+21) | USA300HOU_RS04645/yjlD | hypothetical protein/NADH dehydrogenase‑like protein YjlD | |||||
GAATATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/933309‑933411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcaatgtcagtTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGATTTGCTTTGTTTG < USA300TCH1516_ALE/933421‑933333 GAATATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAA > 1:421872/1‑91 AATATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAA < 1:545436/91‑1 AATATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAA < 1:1371057/91‑1 TATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGC < 1:1934317/91‑1 TGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAA > 1:1568484/1‑91 GTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAAT > 1:551262/1‑91 GTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAAT > 1:551279/1‑91 GCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTC > 1:1990478/1‑91 AGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAG > 1:2738295/1‑91 GATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGT > 1:1751789/1‑91 TATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTA < 1:1401857/91‑1 TATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTA < 1:1402557/91‑1 ATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTAT < 1:119328/91‑1 CAAACAAAGCAGATCACTCGATTTATAGACCAAAAGCTTGTGAATGAAGAATATACACATTACTAAAAGCAATGTCAGTTCACACTATTAC < 1:1199282/91‑1 AAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACT < 1:4091791/91‑1 AACAAAGCAAATCACTCGATTTATAGACCAAGAGCTTGTGAATGGATAATATATACACAACTAAAAGCAATGTCAGTTCACACTATTACTG < 1:3309735/91‑1 AACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTG < 1:174295/91‑1 ACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGA < 1:2367535/91‑1 CAAAGCATATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGAC < 1:2069445/91‑1 CAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGAC < 1:2069947/91‑1 CAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGAC < 1:3490016/91‑1 CAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGAC < 1:3489826/91‑1 CAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGAC < 1:3489816/91‑1 AAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACA < 1:1633334/91‑1 AAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACA < 1:702050/91‑1 AAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACA < 1:1069271/91‑1 AAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACA < 1:1210324/91‑1 AAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACAT < 1:751882/91‑1 AAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACAT < 1:2835830/91‑1 AGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACATT < 1:329008/91‑1 AAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACATTGCT < 1:1628787/91‑1 AAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACATTGCT < 1:1628712/91‑1 AGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACATTGCTTTTAGTTATGTGTATA < 1:3358649/91‑1 AAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTC < 1:633114/91‑1 AAAAGCAATGTCAGTTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGA > 1:3085873/1‑91 AAGCAATGTCAGTTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGATT < 1:470862/91‑1 AGCAATGTCAGTTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGATTT < 1:433442/91‑1 AGCAATGTCAGTTCACACTATTACTGACATTGCTTTTAGTTATATGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGATTT < 1:4145897/91‑1 ATGTCAGTTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGATTTGCTT < 1:2698450/91‑1 TGTCAGTTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGATTTGCTTT < 1:2279252/91‑1 CAGTTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGATTTGCTTTGTT > 1:2899693/1‑91 GTTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGATTTGCTTTGTTTG < 1:2994898/91‑1 GAATATGTAGCAGATGGTTATATACAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/933309‑933411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcaatgtcagtTCACACTATTACTGACATTGCTTTTAGTTATGTGTATATTATTCATTCACAAGCTTTTGGTCTATAAATCGAGTGATTTGCTTTGTTTG < USA300TCH1516_ALE/933421‑933333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |