New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 93341169 (0.700)24 (0.300) 13/130 NT 27.0% intergenic (+28/+31) USA300HOU_RS04645/yjlD hypothetical protein/NADH dehydrogenase‑like protein YjlD
?USA300TCH1516_ALE = 933421 74 (0.930)intergenic (+38/+21) USA300HOU_RS04645/yjlD hypothetical protein/NADH dehydrogenase‑like protein YjlD

Only 100 of 116 total aligned reads displayed.

CAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTAC  >  USA300TCH1516_ALE/933333‑933510
                                                                                        |                                                                                         
caaacaaaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAac                                                                                         <  1:2994898‑M2/91‑3 (MQ=255)
  aacaaaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAactg                                                                                       >  1:2899693‑M2/1‑87 (MQ=255)
     aaaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAactgaca                                                                                    <  1:2279252‑M2/91‑8 (MQ=255)
      aaGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAactgacat                                                                                   <  1:2698450‑M2/91‑9 (MQ=255)
          aaaTCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACATATAACTAAAAGCAATGTCAGTAATAGTGTGAactgacattgct                                                                               <  1:4145897‑M2/91‑13 (MQ=255)
          aaaTCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAactgacattgct                                                                               <  1:433442‑M2/91‑13 (MQ=255)
           aaTCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAactgacattgctt                                                                              <  1:470862‑M2/91‑14 (MQ=255)
             tCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAactgacattgctttt                                                                            >  1:3085873‑M2/1‑76 (MQ=255)
              cACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCttttt                                                                           >  1:3127698/1‑91 (MQ=255)
               aCTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTtttta                                                                          >  1:427269/1‑91 (MQ=255)
                 tCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaat                                                                        <  1:2737123/91‑1 (MQ=255)
                    aTTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaatttt                                                                     <  1:1964085/91‑1 (MQ=255)
                     tttATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTttttaatttta                                                                    >  1:1427207/1‑91 (MQ=255)
                       tataGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAAc                                                                  <  1:1804323/91‑1 (MQ=255)
                       tataGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAAc                                                                  <  1:1803582/91‑1 (MQ=255)
                       tataGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAAc                                                                  <  1:2874987/91‑1 (MQ=255)
                        ataGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAAcc                                                                 <  1:2464673/91‑1 (MQ=255)
                        ataGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAAcc                                                                 >  1:3920982/1‑91 (MQ=255)
                        ataGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGGCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAAcc                                                                 <  1:2464587/91‑1 (MQ=255)
                         taGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCa                                                                >  1:3875380/1‑91 (MQ=255)
                          aGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCAt                                                               >  1:3889127/1‑91 (MQ=255)
                          aGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCAt                                                               >  1:2512312/1‑91 (MQ=255)
                          aGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCAt                                                               >  1:3093741/1‑91 (MQ=255)
                             ccAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATtgt                                                            <  1:3247100/91‑1 (MQ=255)
                                 aaGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGata                                                        >  1:4010839/1‑91 (MQ=255)
                                 aaGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGata                                                        >  1:1589275/1‑91 (MQ=255)
                                  aGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGatat                                                       <  1:3022364/91‑1 (MQ=255)
                                   gCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATAtt                                                      >  1:438094/1‑91 (MQ=255)
                                    cTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATAttt                                                     <  1:2354123/91‑1 (MQ=255)
                                     ttGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTta                                                    >  1:3908765/1‑91 (MQ=255)
                                      tgtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACAGTGCTTTTTAATTTTAACCATTGTGATATTtat                                                   >  1:3535571/1‑91 (MQ=255)
                                       gtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtata                                                  >  1:1635584/1‑91 (MQ=255)
                                       gtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtata                                                  >  1:1634976/1‑91 (MQ=255)
                                       gtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtata                                                  <  1:373095/91‑1 (MQ=255)
                                       gtgAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTtata                                                  >  1:1812796/1‑91 (MQ=255)
                                          aatgaatAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATaa                                               <  1:56876/91‑1 (MQ=255)
                                           atgaatAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAAc                                              >  1:1428653/1‑91 (MQ=255)
                                            tgaatAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAAcc                                             <  1:2726661/91‑1 (MQ=255)
                                            tgaatAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAAcc                                             <  1:3227470/91‑1 (MQ=255)
                                             gaatAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttt                                            <  1:633114‑M2/91‑48 (MQ=255)
                                             gaatAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCa                                            <  1:644588/91‑1 (MQ=255)
                                              aataatATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCaa                                           <  1:1052291/91‑1 (MQ=255)
                                                taataTACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAg                                         >  1:3812355/1‑91 (MQ=255)
                                                taataTACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAg                                         >  1:48243/1‑91 (MQ=255)
                                                  atatACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTa                                       <  1:1298427/91‑1 (MQ=255)
                                                  atatACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTa                                       <  1:2399606/91‑1 (MQ=255)
                                                   tataCACATAACTAAAAGCAATGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtct                                      <  1:3358649‑M2/91‑54 (MQ=255)
                                                   tataCACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTAc                                      >  1:1077067/1‑91 (MQ=255)
                                                     taCACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGc                                    >  1:3573232/1‑91 (MQ=255)
                                                     taCACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGc                                    <  1:331478/91‑1 (MQ=255)
                                                     taCACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGc                                    <  1:2838932/91‑1 (MQ=255)
                                                      acacATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGcc                                   >  1:490635/1‑91 (MQ=255)
                                                      acacATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGcc                                   >  1:2829218/1‑91 (MQ=255)
                                                       cacaTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAGTTTTAACCATTGTCATATTTATATAACCAAAGTGCGCCg                                  >  1:3860983/1‑91 (MQ=255)
                                                       cacaTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCg                                  <  1:3158086/91‑1 (MQ=255)
                                                       cacaTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCg                                  >  1:864619/1‑91 (MQ=255)
                                                       cacaTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCg                                  >  1:3060608/1‑91 (MQ=255)
                                                        acaTAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCgg                                 <  1:3370133/91‑1 (MQ=255)
                                                              cTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTa                           <  1:676130/91‑1 (MQ=255)
                                                               tAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaa                          <  1:2312625/91‑1 (MQ=255)
                                                                 aaaGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaaaa                        >  1:1791137/1‑91 (MQ=255)
                                                                 aaaGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTaaaa                        <  1:145306/91‑1 (MQ=255)
                                                                   aGCAATGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgattt                      <  1:1628712‑M2/91‑70 (MQ=255)
                                                                   aGCAATGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgattt                      <  1:1628787‑M2/91‑70 (MQ=255)
                                                                      aaTGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgct                   <  1:329008‑M2/91‑73 (MQ=255)
                                                                       aTGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctt                  <  1:751882‑M2/91‑74 (MQ=255)
                                                                       aTGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctt                  <  1:2835830‑M2/91‑74 (MQ=255)
                                                                       aTGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAg                  >  1:1155285/1‑91 (MQ=255)
                                                                       aTGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAg                  >  1:2995717/1‑91 (MQ=255)
                                                                        tGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgcttt                 <  1:1069271‑M2/91‑75 (MQ=255)
                                                                        tGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgcttt                 <  1:702050‑M2/91‑75 (MQ=255)
                                                                        tGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgcttt                 <  1:1210324‑M2/91‑75 (MQ=255)
                                                                        tGTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgcttt                 <  1:1633334‑M2/91‑75 (MQ=255)
                                                                        tGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGc                 >  1:576414/1‑91 (MQ=255)
                                                                        tGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGc                 >  1:3155515/1‑91 (MQ=255)
                                                                         gTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctttg                <  1:2069947‑M2/91‑76 (MQ=255)
                                                                         gTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctttg                <  1:3489816‑M2/91‑76 (MQ=255)
                                                                         gTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctttg                <  1:3490016‑M2/91‑76 (MQ=255)
                                                                         gTCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatatgctttg                <  1:2069445‑M2/91‑76 (MQ=255)
                                                                         gTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCg                <  1:82793/91‑1 (MQ=255)
                                                                          tCAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctttgt               <  1:2367535‑M2/91‑77 (MQ=255)
                                                                           cAGTAATAGTGTGAactgacattgcttttagttgtgtatatattatccattcacaagctcttggtctataaatcgagtgatttgctttgtt              <  1:3309735‑M2/91‑78 (MQ=255)
                                                                           cAGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctttgtt              <  1:174295‑M2/91‑78 (MQ=255)
                                                                            aGTAATAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctttgttt             <  1:4091791‑M2/91‑79 (MQ=255)
                                                                            aGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAgt             >  1:557307/1‑91 (MQ=255)
                                                                            aGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAgt             >  1:558826/1‑91 (MQ=255)
                                                                             gTAATAGTGTGAactgacattgcttttagtaatgtgtatattcttcattcacaagcttttggtctataaatcgagtgatctgctttgtttg            <  1:1199282‑M2/91‑80 (MQ=255)
                                                                             gTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAgtc            <  1:788258/91‑1 (MQ=255)
                                                                               aaTAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAgtcgt          <  1:3103152/91‑1 (MQ=255)
                                                                                aTAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctttgtttgtat         <  1:119328‑M2/91‑83 (MQ=255)
                                                                                aTAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAgtcgtc         >  1:259328/1‑91 (MQ=255)
                                                                                 tAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctttgtttgtata        <  1:1401857‑M2/91‑84 (MQ=255)
                                                                                 tAGTGTGAactgacattgcttttagttatgtgtatattattcattcacaagcttttggtctataaatcgagtgatttgctttgtttgtata        <  1:1402557‑M2/91‑84 (MQ=255)
                                                                                  aGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCt       <  1:2884211/91‑1 (MQ=255)
                                                                                  aGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCt       <  1:2755080/91‑1 (MQ=255)
                                                                                  aGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCt       >  1:2682314/1‑91 (MQ=255)
                                                                                  aGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCt       >  1:2681445/1‑91 (MQ=255)
                                                                                    tgtgAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGt     <  1:2910331/91‑1 (MQ=255)
                                                                                      tgAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAGGCGAGTCGTCCTGTTa   <  1:2778581/91‑1 (MQ=255)
                                                                                       gAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGCTAc  >  1:3269617/1‑91 (MQ=255)
                                                                                        |                                                                                         
CAAACAAAGCAAATCACTCGATTTATAGACCAAAAGCTTGTGAATGAATAATATACACATAACTAAAAGCAATGTCAGTAATAGTGTGAACTGACATTGCTTTTTAATTTTAACCATTGTGATATTTATATAACCAAAGTACGCCGGATTTTAAAATAGAAGCGAGTCGTCCTGTTAC  >  USA300TCH1516_ALE/933333‑933510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.