| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 940816 = | 101 (1.030) | 10 (0.110) | 6/148 | NT | 10.5% | coding (372/375 nt) | USA300HOU_RS04680 | Putative esterase |
| ? | USA300TCH1516_ALE | 940879 = | 77 (0.850) | coding (1151/1155 nt) | ptlE | Neopentalenolactone D synthase | |||||
ACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/940911‑940816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttatGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAA > USA300TCH1516_ALE/940879‑940967 ACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCT > 1:904671/1‑91 AGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTT < 1:951919/91‑1 AGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTT < 1:951781/91‑1 GCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTA > 1:2333427/1‑91 GCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTA > 1:2333437/1‑91 AAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGT > 1:3126815/1‑91 AAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGT > 1:3127120/1‑91 AAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGT > 1:3127688/1‑91 AAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTT > 1:3777106/1‑91 AACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTC > 1:711163/1‑91 AACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATCGTTGTAGTTTTAGAAATGCTTGTTC > 1:3869184/1‑91 AACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATAGTTGTAGTTTTAGAAATGCTTGTTC > 1:3869501/1‑91 ACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCA > 1:3386500/1‑91 CTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAA > 1:3569475/1‑91 ATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCC > 1:2054588/1‑91 TTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCC < 1:13824/91‑1 TTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCC < 1:2555089/91‑1 TTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTACAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCT > 1:3517205/1‑91 TATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTA > 1:4023548/1‑91 TATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTA < 1:3227392/91‑1 TATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTA < 1:749057/91‑1 TATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTA > 1:2474814/1‑91 ATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAA > 1:826149/1‑91 ATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAA > 1:873418/1‑91 ATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAA > 1:873800/1‑91 ACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/940911‑940816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttatGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGGTCCTAA > USA300TCH1516_ALE/940879‑940967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |