BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	940816 =	101 (1.030)	10 (0.110)	6/148	NT	10.5%	coding (372/375 nt)	USA300HOU_RS04680	Putative esterase
*	?	USA300TCH1516_ALE	940879 =	77 (0.850)	10 (0.110)	6/148	NT	10.5%	coding (1151/1155 nt)	ptlE	Neopentalenolactone D synthase

Only 100 of 137 total aligned reads displayed.

TCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAAT  >  USA300TCH1516_ALE/940727‑940905

ttaggaccatttggtagaaatgttatgggtggccgtaaagctgccgaacgcattgaacaagcatttctaaaactacaacaatatagcgcAt                                                                                          >  1:873418‑M1/90‑91 (MQ=255)

ttaggaccatttggtagaaatgttatgggtggccgtaaagctgccgaacgcattgaacaagcatttctaaaactacaacaatatagcgcAt                                                                                          >  1:826149‑M1/90‑91 (MQ=255)

 taggaccatttggtagaaatgttatgggtggccgtaaagctgccgaacgcattgaacaagcatttctaaaactacaacaatatagcgcATa                                                                                         <  1:3227392‑M1/3‑1 (MQ=255)

 taggaccatttggtagaaatgttatgggtggccgtaaagctgccgaacgcattgaacaagcatttctaaaactacaacaatatagcgcATa                                                                                         >  1:2474814‑M1/89‑91 (MQ=255)

 taggaccatttggtagaaatgttatgggtggccgtaaagctgccgaacgcattgaacaagcatttctaaaactacaacaatatagcgcATa                                                                                         >  1:4023548‑M1/89‑91 (MQ=255)

 taggaccatttggtagaaatgttatgggtggccgtaaagctgccgaacgcattgaacaagcatttctaaaactacaacaatatagcgcATa                                                                                         <  1:749057‑M1/3‑1 (MQ=255)

 cGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTtaaaata                                                                                         <  1:3155504/91‑1 (MQ=255)

 cGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTtaaaata                                                                                         <  1:321161/91‑1 (MQ=255)

  gACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTtaaaataa                                                                                        <  1:2114332/91‑1 (MQ=255)

  gACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGATATGCGTGGTACAGTTGCTATTAAACCTTtaaaataa                                                                                        <  1:3504943/91‑1 (MQ=255)

  aggaccatttggtagaaatgttatgggtggccgtaaagctgccgaacgcattgtacaagcatttctaaaactacaacaatatagcgcATaa                                                                                        >  1:3517205‑M1/88‑91 (MQ=255)

   ggaccatttggtagaaatgttatgggtggccgtaaagctgccgaacgcattgaacaagcatttctaaaactacaacaatatagcgcATaaa                                                                                       <  1:13824‑M1/5‑1 (MQ=255)

   ggaccatttggtagaaatgttatgggtggccgtaaagctgccgaacgcattgaacaagcatttctaaaactacaacaatatagcgcATaaa                                                                                       <  1:2555089‑M1/5‑1 (MQ=255)

   acacATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTtaaaataaa                                                                                       <  1:1164505/91‑1 (MQ=255)

     acaTGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAg                                                                                     <  1:1606864/91‑1 (MQ=255)

      caTGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGa                                                                                    >  1:2442986/1‑91 (MQ=255)

       aTGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGaa                                                                                   <  1:2515818/91‑1 (MQ=255)

         gTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACt                                                                                 >  1:1499923/1‑91 (MQ=255)

            tGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCt                                                                              >  1:2060387/1‑91 (MQ=255)

               gATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGc                                                                           <  1:2790188/91‑1 (MQ=255)

               gATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACATTTAAAATAAAAGAACTGCTAGc                                                                           <  1:2547189/91‑1 (MQ=255)

               gATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACATTTAAAATAAAAGAACTGCTAGc                                                                           <  1:2567618/91‑1 (MQ=255)

                atatAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAGGAACTGCTAGCt                                                                          <  1:3203402/91‑1 (MQ=255)

                atatAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCt                                                                          >  1:2634065/1‑91 (MQ=255)

                atatAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCt                                                                          >  1:2635/1‑91 (MQ=255)

                atatAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCt                                                                          >  1:3484218/1‑91 (MQ=255)

                 tataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTg                                                                         >  1:2976562/1‑91 (MQ=255)

                 tataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTg                                                                         >  1:2979614/1‑91 (MQ=255)

                 tataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTg                                                                         >  1:1983808/1‑91 (MQ=255)

                 tataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTg                                                                         <  1:117114/91‑1 (MQ=255)

                  ataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGa                                                                        <  1:2958228/91‑1 (MQ=255)

                  ataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGa                                                                        <  1:2797633/91‑1 (MQ=255)

                   taAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGaa                                                                       <  1:307786/91‑1 (MQ=255)

                   taAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGaa                                                                       <  1:3882746/91‑1 (MQ=255)

                    aaaaaTTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGaaa                                                                      <  1:1922677/91‑1 (MQ=255)

                     aaaaTTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAAt                                                                     <  1:2310553/91‑1 (MQ=255)

                       aaTTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGt                                                                   >  1:561635/1‑91 (MQ=255)

                       aaTTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGt                                                                   <  1:1541245/91‑1 (MQ=255)

                          tAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTAt                                                                <  1:678692/91‑1 (MQ=255)

                          tAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTAt                                                                <  1:3959798/91‑1 (MQ=255)

                          gggtggccgtaaagctgccgaacgcattgaacaagcatttctaaaactacaacaatatagcgcATAAAAGAACTGCTAGCTGAAATGTTAt                                                                >  1:2054588‑M1/64‑91 (MQ=255)

                           aaGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATg                                                               >  1:3255894/1‑91 (MQ=255)

                           aaGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATg                                                               >  1:3255917/1‑91 (MQ=255)

                           aaGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATg                                                               <  1:3035511/91‑1 (MQ=255)

                             gAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATgag                                                             >  1:4089044/1‑91 (MQ=255)

                              aaTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATgaga                                                            >  1:2260676/1‑91 (MQ=255)

                              aaTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATgaga                                                            >  1:1202002/1‑91 (MQ=255)

                               aTGACAAAGAACAATTAATTACAGTTATGCTTGCTACCGTTGCTATTAAACCTTTAAAACAAAAGAACTGCTAGCTGAAATGTTATGAGat                                                           >  1:3307159/1‑91 (MQ=255)

                                 gACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGatat                                                         >  1:807931/1‑91 (MQ=255)

                                 gACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGatat                                                         >  1:808115/1‑91 (MQ=255)

                                  aCAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATAtt                                                        <  1:1497840/91‑1 (MQ=255)

                                      aGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATa                                                    >  1:1399639/1‑91 (MQ=255)

                                        aaCAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAAc                                                  <  1:1757600/91‑1 (MQ=255)

                                        aaCAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTGTAAAATAATAGAACTGCTAGCTGAAATGTTATGAGATATTCATAAc                                                  <  1:3310545/91‑1 (MQ=255)

                                          cAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTa                                                >  1:289691/1‑91 (MQ=255)

                                            attaattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACg                                              >  1:3892700/1‑91 (MQ=255)

                                            attaattaCAGTTATGCGTGGTACAGTTGCTATTAAAACTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACg                                              >  1:3507035/1‑91 (MQ=255)

                                              taattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGc                                            >  1:3949512/1‑91 (MQ=255)

                                               aattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCt                                           >  1:2753881/1‑91 (MQ=255)

                                                attaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTa                                          <  1:3030082/91‑1 (MQ=255)

                                                   aCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAACATAAAAGAACTGCTAGCTGAAATGTTAAGAGATATTCATAACTACGGATAGCa                                       >  1:3860676/1‑91 (MQ=255)

                                                    cAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAg                                      >  1:898158/1‑91 (MQ=255)

                                                    cAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAg                                      <  1:524687/91‑1 (MQ=255)

                                                    cAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAg                                      >  1:2058220/1‑91 (MQ=255)

                                                     tgaacaagcatttctaaaactacaacaatatagcgcATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGt                                     >  1:3386500‑M1/37‑91 (MQ=255)

                                                     aGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGt                                     >  1:1023635/1‑91 (MQ=255)

                                                     aGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGt                                     >  1:860849/1‑91 (MQ=255)

                                                      gaacaagcatttctaaaactacaactatatagcgcATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGtt                                    >  1:3869501‑M1/36‑91 (MQ=255)

                                                      gaacaagcatttctaaaactacaacaatatagcgcATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGtt                                    >  1:711163‑M1/36‑91 (MQ=255)

                                                       aacaagcatttctaaaactacaacaatatagcgcATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGttt                                   >  1:3777106‑M1/35‑91 (MQ=255)

                                                        tATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGtttt                                  >  1:1823137/1‑91 (MQ=255)

                                                        tATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGtttt                                  >  1:3615601/1‑91 (MQ=255)

                                                        acaagcatttctaaaactacaacaatatagcgcATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGtttt                                  >  1:3126815‑M1/34‑91 (MQ=255)

                                                        acaagcatttctaaaactacaacaatatagcgcATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGtttt                                  >  1:3127120‑M1/34‑91 (MQ=255)

                                                         aTGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGtcttt                                 >  1:3733413/1‑91 (MQ=255)

                                                             gTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTAt                             >  1:639167/1‑91 (MQ=255)

                                                                gTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATgcg                          >  1:3819158/1‑91 (MQ=255)

                                                                gTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATgcg                          <  1:2974131/91‑1 (MQ=255)

                                                                  aCAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCt                        <  1:3263308/91‑1 (MQ=255)

                                                                    aGTTGCTATTAATCCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCtat                      >  1:3184007/1‑91 (MQ=255)

                                                                     gTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCtata                     >  1:633088/1‑91 (MQ=255)

                                                                     gTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCtata                     >  1:872313/1‑91 (MQ=255)

                                                                     gTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCtata                     >  1:1218207/1‑91 (MQ=255)

                                                                      ttGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTatat                    >  1:2338501/1‑91 (MQ=255)

                                                                      ttGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTatat                    >  1:879528/1‑91 (MQ=255)

                                                                        gCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAttg                  <  1:1025468/91‑1 (MQ=255)

                                                                         cTATTAATCCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAttgt                 <  1:2073977/91‑1 (MQ=255)

                                                                         cTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAttgt                 <  1:1468377/91‑1 (MQ=255)

                                                                             tAAACCTTTAAAATAAAAGAACTGCTAGCTGAACTGTTATGAGATATTCATAACTACGGTTAGCAGTTTTTTTATGCGCTATATTGTTGTa             <  1:3686413/91‑1 (MQ=255)

                                                                              aaaCCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAg            >  1:3708185/1‑91 (MQ=255)

                                                                               aaCCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGt           <  1:2205042/91‑1 (MQ=255)

                                                                                 ccTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGttt         <  1:2936829/91‑1 (MQ=255)

                                                                                 ccTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGttt         >  1:3652536/1‑91 (MQ=255)

                                                                                    ttAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAg      >  1:803403/1‑91 (MQ=255)

                                                                                    ttAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAg      <  1:212101/91‑1 (MQ=255)

                                                                                    ttAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAg      >  1:3336838/1‑91 (MQ=255)

                                                                                      aaaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGaa    <  1:1096198/91‑1 (MQ=255)

                                                                                       aaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGaaa   <  1:2308593/91‑1 (MQ=255)

                                                                                        aataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAAt  >  1:1850386/1‑91 (MQ=255)

                                                                                        aataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTCGTAGTTTTAGAAAt  <  1:4111930/91‑1 (MQ=255)

TCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAAT  >  USA300TCH1516_ALE/940727‑940905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.