| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 943421 = | 100 (1.020) | 7 (0.080) | 4/142 | NT | 7.6% | coding (1462/1497 nt) | mnhD1_2 | Na(+)/H(+) antiporter subunit D1 |
| ? | USA300TCH1516_ALE | 943487 = | 81 (0.930) | coding (1396/1497 nt) | mnhD1_2 | Na(+)/H(+) antiporter subunit D1 | |||||
TTGCAATCGTTGCAGTTGTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/943519‑943421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaatccatATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTTGAC > USA300TCH1516_ALE/943487‑943576 TTGCAATCGTTGCAGTTGTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTA < 1:587166/91‑1 CAATCGTTGCAGTTGTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAA < 1:3892503/91‑1 ATCGTTGCAGTTGTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATC > 1:1258421/1‑91 ATCGTTGCAGTTGTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATC > 1:1080225/1‑91 ATCGTTGCAGTTGTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATC < 1:305446/91‑1 ATCGTTGCAGTTGTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATC < 1:2522288/91‑1 TCGTTGCAGTTGTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCC > 1:2631093/1‑91 TTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCCATATAAAACAGTTATCACAAC > 1:1690047/1‑91 TTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCCATATAAAACAGTTATCACAACT > 1:828669/1‑91 TTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCCATATAAAACAGTTATCACAACT > 1:2703062/1‑91 TTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCCATATAAAACAGTTATCACAACT > 1:2700367/1‑91 GATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCCATATAAAACAGTTATCACAACTGCAACGAT > 1:4124606/1‑91 GATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCCATATAAAACAGTTATCACAACTGCAACGAT > 1:624127/1‑91 GCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCG > 1:1823104/1‑91 ACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTT < 1:2881129/91‑1 ACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTT < 1:2143360/91‑1 CAATCCATATAAAACAGTTATCACAACTGCAACGATTCCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTT > 1:3497580/1‑91 TCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGT > 1:3042819/1‑91 CCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTT > 1:1819931/1‑91 CATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTTG > 1:2377682/1‑91 ATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTTGA > 1:1891032/1‑91 TATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTTGAC > 1:3765866/1‑91 TTGCAATCGTTGCAGTTGTGATAACTGTTTTATATGGATTGTCAGCAGATTACTTATATCCAATGGTAAAAGCTGGTGCAGAAACATTCTACAATCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/943519‑943421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaatccatATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTTGAC > USA300TCH1516_ALE/943487‑943576 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |