BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	943421 =	100 (1.020)	7 (0.080)	4/142	NT	7.6%	coding (1462/1497 nt)	mnhD1_2	Na(+)/H(+) antiporter subunit D1
*	?	USA300TCH1516_ALE	943487 =	81 (0.930)	7 (0.080)	4/142	NT	7.6%	coding (1396/1497 nt)	mnhD1_2	Na(+)/H(+) antiporter subunit D1

Only 100 of 121 total aligned reads displayed.

CACAAACAACCAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAAC  >  USA300TCH1516_ALE/943331‑943505

gtcaaccaaaaggatatgatcttaataacaaagtcgacgtcaaatatttaactacgattgcaatcgttgcagttgtgataactgttttata                                                                                      >  1:3765866‑M1/91‑91 (MQ=255)

cacaAACAACCAATACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGa                                                                                      <  1:2638606/91‑1 (MQ=255)

cacaAACAACCAAAACACTGCGATAATAGAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGa                                                                                      <  1:1888730/91‑1 (MQ=255)

  caaccaaaaggatatgatcttaataacaaagtcgacgtcaaatatttaactacgattgcaatcgttgcagttgtgataactgttttatATg                                                                                    >  1:2377682‑M1/89‑91 (MQ=255)

  caaacaaCCGAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATg                                                                                    <  1:3724207/91‑1 (MQ=255)

   aaccaaaaggatatgatcttaataacaaagtcgacgtcaaatatttaactacgattgcaatcgttgcagttgtgataactgttttatATgg                                                                                   >  1:1819931‑M1/88‑91 (MQ=255)

   aaacaaCCAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATgg                                                                                   <  1:3897902/91‑1 (MQ=255)

   aaacaaCCAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATgg                                                                                   <  1:3897691/91‑1 (MQ=255)

   aaacaaCCAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATgg                                                                                   <  1:2376211/91‑1 (MQ=255)

    accaaaaggatatgatcttaataacaaagtcgacgtcaaatatttaactacgattgcaatcgttgcagttgtgataactgttttatATGGa                                                                                  >  1:3042819‑M1/87‑91 (MQ=255)

       aacCAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTg                                                                               <  1:2442135/91‑1 (MQ=255)

       aaaaggatatgatcttaataacaaagtcgacgtcaaatatttaactacgattggaatcgttgcagttgtgataactgttttatATGGATTg                                                                               >  1:3497580‑M1/84‑91 (MQ=255)

        acCAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATTGATTGt                                                                              <  1:3230880/91‑1 (MQ=255)

        acCAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGt                                                                              <  1:3638552/91‑1 (MQ=255)

        aaaggatatgatcttaataacaaagtcgacgtcaaatatttaactacgattgcaatcgttgcagttgtgataactgttttatATGGATTGt                                                                              <  1:2143360‑M1/9‑1 (MQ=255)

         ccAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTa                                                                             <  1:2894283/91‑1 (MQ=255)

          cAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAg                                                                            >  1:1163498/1‑91 (MQ=255)

          cAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAg                                                                            >  1:3129014/1‑91 (MQ=255)

          cAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAg                                                                            <  1:2510789/91‑1 (MQ=255)

          cAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAg                                                                            >  1:4003836/1‑91 (MQ=255)

          cAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAg                                                                            >  1:1162299/1‑91 (MQ=255)

           aaaaCACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGa                                                                           >  1:732791/1‑91 (MQ=255)

           aaaaCACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGa                                                                           >  1:732792/1‑91 (MQ=255)

           aaaaCACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGa                                                                           >  1:3482223/1‑91 (MQ=255)

            aaaCACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGaa                                                                          <  1:905498/91‑1 (MQ=255)

            aaaCACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGaa                                                                          >  1:898432/1‑91 (MQ=255)

              acacTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATg                                                                        <  1:4059338/91‑1 (MQ=255)

              acacTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATg                                                                        <  1:1471807/91‑1 (MQ=255)

               cacTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGt                                                                       >  1:3998100/1‑91 (MQ=255)

                  tGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTc                                                                    >  1:286956/1‑91 (MQ=255)

                   gCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCt                                                                   >  1:2834539/1‑91 (MQ=255)

                   gCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCt                                                                   >  1:768604/1‑91 (MQ=255)

                    cGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTg                                                                  >  1:3617960/1‑91 (MQ=255)

                     gATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACATCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGc                                                                 <  1:3503378/91‑1 (MQ=255)

                     gATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGc                                                                 <  1:3691363/91‑1 (MQ=255)

                      ataataAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCa                                                                >  1:3896227/1‑91 (MQ=255)

                        aataaAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAGTGTTTCTGCAcc                                                              <  1:3203960/91‑1 (MQ=255)

                        aataaAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCAcc                                                              >  1:442331/1‑91 (MQ=255)

                         ataaAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCa                                                             <  1:3754233/91‑1 (MQ=255)

                         ataaAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCa                                                             <  1:1577667/91‑1 (MQ=255)

                           aaaGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGc                                                           >  1:4035015/1‑91 (MQ=255)

                             aGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCtt                                                         <  1:1651640/91‑1 (MQ=255)

                             aGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCtt                                                         >  1:2375093/1‑91 (MQ=255)

                             aGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTACACCAGCtt                                                         <  1:3043573/91‑1 (MQ=255)

                               tttAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCtttt                                                       <  1:561652/91‑1 (MQ=255)

                               tttAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCtttt                                                       <  1:561637/91‑1 (MQ=255)

                               tttAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCtttt                                                       <  1:2343241/91‑1 (MQ=255)

                               tttAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCtttt                                                       <  1:1222103/91‑1 (MQ=255)

                               tttAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCtttt                                                       <  1:2049516/91‑1 (MQ=255)

                                  aaTACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTAcc                                                    <  1:2847579/91‑1 (MQ=255)

                                   aTACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCa                                                   >  1:2257941/1‑91 (MQ=255)

                                    tACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCAt                                                  <  1:682919/91‑1 (MQ=255)

                                    tACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCAt                                                  >  1:3982104/1‑91 (MQ=255)

                                      cTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTg                                                >  1:1303512/1‑91 (MQ=255)

                                         aTTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGat                                             <  1:2853217/91‑1 (MQ=255)

                                           tGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGatat                                           >  1:3517444/1‑91 (MQ=255)

                                            gTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGAtata                                          <  1:2710005/91‑1 (MQ=255)

                                             tACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATaa                                         >  1:2763569/1‑91 (MQ=255)

                                              aCAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAg                                        <  1:3103761/91‑1 (MQ=255)

                                              aCAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAg                                        <  1:3211612/91‑1 (MQ=255)

                                              aCAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAg                                        <  1:547581/91‑1 (MQ=255)

                                                aGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTa                                      >  1:843721/1‑91 (MQ=255)

                                                 gCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTaa                                     <  1:1592585/91‑1 (MQ=255)

                                                 gCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTaa                                     <  1:1593017/91‑1 (MQ=255)

                                                      gTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCCGCTTTTACCATTGGATATAAGTAATctgc                                >  1:3331918/1‑91 (MQ=255)

                                                      cgattgcaatcgttgcagttgtgataactgttttatATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATctgc                                >  1:1823104‑M1/37‑91 (MQ=255)

                                                       ttATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATctgct                               >  1:3482138/1‑91 (MQ=255)

                                                         aTTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGa                             >  1:1274133/1‑91 (MQ=255)

                                                          tttACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGAc                            <  1:2216600/91‑1 (MQ=255)

                                                          tttACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGAc                            <  1:2218380/91‑1 (MQ=255)

                                                           ttACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACa                           >  1:1660408/1‑91 (MQ=255)

                                                            tACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACaa                          <  1:1275290/91‑1 (MQ=255)

                                                              cctcctAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATc                        >  1:1445845/1‑91 (MQ=255)

                                                              cctcctAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATc                        >  1:2391915/1‑91 (MQ=255)

                                                              atcgttgcagttgtgataactgttttatATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATc                        >  1:624127‑M1/29‑91 (MQ=255)

                                                              atcgttgcagttgtgataactgttttatATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATc                        >  1:4124606‑M1/29‑91 (MQ=255)

                                                                  ctAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCata                    >  1:689190/1‑91 (MQ=255)

                                                                  ctAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCata                    >  1:3042982/1‑91 (MQ=255)

                                                                  ctAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATAGGATATAAGTAATCTGCTGACAATCCata                    >  1:3325734/1‑91 (MQ=255)

                                                                     aTACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaa                 >  1:2016650/1‑91 (MQ=255)

                                                                     aTACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaa                 <  1:1655289/91‑1 (MQ=255)

                                                                      agttgtgataactgttttatATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaaa                >  1:828669‑M1/21‑91 (MQ=255)

                                                                      agttgtgataactgttttatATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaaa                >  1:2703062‑M1/21‑91 (MQ=255)

                                                                      agttgtgataactgttttatATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaaa                >  1:2700367‑M1/21‑91 (MQ=255)

                                                                        cAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAAc              >  1:2363875/1‑91 (MQ=255)

                                                                        cAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAAc              >  1:2480229/1‑91 (MQ=255)

                                                                         aGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACa             >  1:1245978/1‑91 (MQ=255)

                                                                          gCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAg            >  1:3804786/1‑91 (MQ=255)

                                                                          gCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAg            <  1:1975561/91‑1 (MQ=255)

                                                                          gCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAg            <  1:3031992/91‑1 (MQ=255)

                                                                            tttAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGtt          >  1:3356964/1‑91 (MQ=255)

                                                                            tttAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGtt          >  1:3363013/1‑91 (MQ=255)

                                                                             ttAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTa         <  1:2432676/91‑1 (MQ=255)

                                                                             ttAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTa         <  1:1817991/91‑1 (MQ=255)

                                                                             ttAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTa         <  1:2093613/91‑1 (MQ=255)

                                                                                aCGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATca      >  1:3604619/1‑91 (MQ=255)

                                                                                aCGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATca      >  1:3604577/1‑91 (MQ=255)

                                                                                 cGTAGGTTGATGGATTGTAGAATGTCTCTGCACCAGCTTGTACCATTGGATATGAGTAATCTGCTGACAATCCATATAAAACAGTTATcac     <  1:3859693/91‑1 (MQ=255)

                                                                                  gTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATcaca    >  1:1996018/1‑91 (MQ=255)

                                                                                    aGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAAc  >  1:1696485/1‑91 (MQ=255)

CACAAACAACCAAAACACTGCGATAATAAAGTTTAATACTAATTGTACAGCCATGTTATTTACCTCCTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAAC  >  USA300TCH1516_ALE/943331‑943505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.