BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	943421 =	100 (1.020)	7 (0.080)	4/142	NT	7.6%	coding (1462/1497 nt)	mnhD1_2	Na(+)/H(+) antiporter subunit D1
*	?	USA300TCH1516_ALE	943487 =	81 (0.930)	7 (0.080)	4/142	NT	7.6%	coding (1396/1497 nt)	mnhD1_2	Na(+)/H(+) antiporter subunit D1

Only 100 of 117 total aligned reads displayed.

CTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTTGAC  >  USA300TCH1516_ALE/943397‑943576

ctAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCata                                                                                           >  1:689190/1‑91 (MQ=255)

ctAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCata                                                                                           >  1:3042982/1‑91 (MQ=255)

ctAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATAGGATATAAGTAATCTGCTGACAATCCata                                                                                           >  1:3325734/1‑91 (MQ=255)

   aTACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaa                                                                                        >  1:2016650/1‑91 (MQ=255)

   aTACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaa                                                                                        >  1:3603852/1‑91 (MQ=255)

   aTACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaa                                                                                        <  1:1655289/91‑1 (MQ=255)

    agttgtgataactgttttatATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaaa                                                                                       >  1:2703062‑M1/21‑91 (MQ=255)

    agttgtgataactgttttatATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaaa                                                                                       >  1:2700367‑M1/21‑91 (MQ=255)

    agttgtgataactgttttatATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATaaa                                                                                       >  1:828669‑M1/21‑91 (MQ=255)

      cAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAAc                                                                                     >  1:330674/1‑91 (MQ=255)

      cAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAAc                                                                                     >  1:2363875/1‑91 (MQ=255)

       aGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACa                                                                                    >  1:1245978/1‑91 (MQ=255)

        gCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAg                                                                                   <  1:1975561/91‑1 (MQ=255)

        gCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAg                                                                                   <  1:3031992/91‑1 (MQ=255)

        gCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAg                                                                                   >  1:3804786/1‑91 (MQ=255)

          tttAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGtt                                                                                 >  1:3356964/1‑91 (MQ=255)

           ttAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTa                                                                                <  1:2432676/91‑1 (MQ=255)

           ttAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTa                                                                                <  1:1817991/91‑1 (MQ=255)

           ttAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTa                                                                                <  1:2093613/91‑1 (MQ=255)

              aCGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATca                                                                             >  1:3604577/1‑91 (MQ=255)

              aCGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATca                                                                             >  1:3604619/1‑91 (MQ=255)

              aCGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATca                                                                             >  1:6513/1‑91 (MQ=255)

               cGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATcac                                                                            >  1:2055989/1‑91 (MQ=255)

               cGTAGGTTGATGGATTGTAGAATGTCTCTGCACCAGCTTGTACCATTGGATATGAGTAATCTGCTGACAATCCATATAAAACAGTTATcac                                                                            <  1:3860117/91‑1 (MQ=255)

               cGTAGGTTGATGGATTGTAGAATGTCTCTGCACCAGCTTGTACCATTGGATATGAGTAATCTGCTGACAATCCATATAAAACAGTTATcac                                                                            <  1:3859693/91‑1 (MQ=255)

                  ttttatatggattgtcagcagattacttatatccaatggtaaaagctggtgcagaaacattctacaatccatATAAAACAGTTATCACAAc                                                                         >  1:1690047‑M2/73‑91 (MQ=255)

                  aGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAAc                                                                         >  1:1696485/1‑91 (MQ=255)

                   tttatatggattgtcagcagattacttatatccaatggtaaaagctggtgcagaaacattctacaatccatATAAAACAGTTATCACAACt                                                                        >  1:2703062‑M2/72‑91 (MQ=255)

                   tttatatggattgtcagcagattacttatatccaatggtaaaagctggtgcagaaacattctacaatccatATAAAACAGTTATCACAACt                                                                        >  1:2700367‑M2/72‑91 (MQ=255)

                   tttatatggattgtcagcagattacttatatccaatggtaaaagctggtgcagaaacattctacaatccatATAAAACAGTTATCACAACt                                                                        >  1:828669‑M2/72‑91 (MQ=255)

                           gattgtcagcagattacttatatccaatggtaaaagctggtgcagaaacattctacaatccatATAAAACAGTTATCACAACTGCAACGAt                                                                >  1:624127‑M2/64‑91 (MQ=255)

                           GATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGAt                                                                >  1:1258421‑M1/1‑91 (MQ=255)

                           GATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGAt                                                                >  1:1080225‑M1/1‑91 (MQ=255)

                           GATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGAt                                                                <  1:2522288‑M1/91‑1 (MQ=255)

                           GATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGAt                                                                <  1:305446‑M1/91‑1 (MQ=255)

                             TTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTg                                                              <  1:3892503‑M1/91‑1 (MQ=255)

                                TAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCaa                                                           <  1:587166‑M1/91‑1 (MQ=255)

                                  gAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATc                                                         >  1:413060/1‑91 (MQ=255)

                                   aaTGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCg                                                        >  1:735380/1‑91 (MQ=255)

                                    aTGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGt                                                       <  1:1257282/91‑1 (MQ=255)

                                      gTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAg                                                     >  1:3785718/1‑91 (MQ=255)

                                        ttCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGtt                                                   >  1:1976107/1‑91 (MQ=255)

                                         tCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTa                                                  >  1:654304/1‑91 (MQ=255)

                                         tCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTa                                                  >  1:3394785/1‑91 (MQ=255)

                                         tCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTa                                                  >  1:4102822/1‑91 (MQ=255)

                                         tCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTa                                                  <  1:2426412/91‑1 (MQ=255)

                                         tCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTa                                                  <  1:4029132/91‑1 (MQ=255)

                                         tCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTa                                                  <  1:4029146/91‑1 (MQ=255)

                                          cTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCCTATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTaa                                                 >  1:3295921/1‑91 (MQ=255)

                                              aCCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAatat                                             <  1:1195814/91‑1 (MQ=255)

                                              aCCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAatat                                             >  1:2548784/1‑91 (MQ=255)

                                              aCCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAatat                                             >  1:2546684/1‑91 (MQ=255)

                                               ccAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATAtt                                            <  1:519827/91‑1 (MQ=255)

                                                 aGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTg                                          >  1:4070717/1‑91 (MQ=255)

                                                 aGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTg                                          >  1:2249006/1‑91 (MQ=255)

                                                  gCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGa                                         >  1:2571273/1‑91 (MQ=255)

                                                  gCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGa                                         >  1:3195174/1‑91 (MQ=255)

                                                   cTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGAc                                        <  1:1396452/91‑1 (MQ=255)

                                                    ttttACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACg                                       >  1:2548213/1‑91 (MQ=255)

                                                    ttttACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACg                                       <  1:2514764/91‑1 (MQ=255)

                                                      ttACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTc                                     <  1:4033683/91‑1 (MQ=255)

                                                      ttACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTc                                     >  1:1513582/1‑91 (MQ=255)

                                                      ttACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTc                                     <  1:3259392/91‑1 (MQ=255)

                                                      ttACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTc                                     <  1:2431513/91‑1 (MQ=255)

                                                         ccATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGAc                                  >  1:2844127/1‑91 (MQ=255)

                                                         ccATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGAc                                  <  1:1707968/91‑1 (MQ=255)

                                                         ccATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGAc                                  <  1:424901/91‑1 (MQ=255)

                                                           aTTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACtt                                >  1:4084786/1‑91 (MQ=255)

                                                            ttGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACttt                               <  1:1605114/91‑1 (MQ=255)

                                                            ttGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACttt                               <  1:1604931/91‑1 (MQ=255)

                                                             tGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTg                              <  1:2778113/91‑1 (MQ=255)

                                                              ggATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGt                             <  1:3108817/91‑1 (MQ=255)

                                                               gATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGtt                            <  1:907431/91‑1 (MQ=255)

                                                               gATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGtt                            >  1:188900/1‑91 (MQ=255)

                                                                atatAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGtta                           >  1:2174951/1‑91 (MQ=255)

                                                                atatAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGtta                           <  1:2842318/91‑1 (MQ=255)

                                                                 tataAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGttat                          <  1:1492890/91‑1 (MQ=255)

                                                                 tataAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGttat                          >  1:3919887/1‑91 (MQ=255)

                                                                  ataAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGttatt                         <  1:2709258/91‑1 (MQ=255)

                                                                   taAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGttatta                        >  1:1940404/1‑91 (MQ=255)

                                                                     aGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAg                      >  1:829564/1‑91 (MQ=255)

                                                                     aGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAg                      >  1:490744/1‑91 (MQ=255)

                                                                     aGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAg                      >  1:285307/1‑91 (MQ=255)

                                                                     aGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAg                      >  1:2916918/1‑91 (MQ=255)

                                                                      gTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGa                     <  1:612265/91‑1 (MQ=255)

                                                                       tAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGAt                    >  1:431701/1‑91 (MQ=255)

                                                                        aaTCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATc                   >  1:1944474/1‑91 (MQ=255)

                                                                         aTCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCa                  <  1:2426144/91‑1 (MQ=255)

                                                                           ctgctgACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCata                <  1:709667/91‑1 (MQ=255)

                                                                           ctgctgACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCata                >  1:3444010/1‑91 (MQ=255)

                                                                              ctgACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATcc             >  1:2711323/1‑91 (MQ=255)

                                                                               tgACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCt            <  1:170521/91‑1 (MQ=255)

                                                                                gACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCtt           <  1:2770530/91‑1 (MQ=255)

                                                                                gACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCtt           <  1:1372384/91‑1 (MQ=255)

                                                                                 acaatccatATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCttt          <  1:2143360‑M2/82‑1 (MQ=255)

                                                                                  caatccatATAAAACAGTTATCACAACTGCAACGATTCCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCtttt         >  1:3497580‑M2/9‑91 (MQ=255)

                                                                                     tccatATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGt      >  1:3042819‑M2/6‑91 (MQ=255)

                                                                                      ccatATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGtt     >  1:1819931‑M2/5‑91 (MQ=255)

                                                                                       catATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTTg    >  1:2377682‑M2/4‑91 (MQ=255)

                                                                                        atATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTTGa   >  1:1891032‑M2/3‑91 (MQ=255)

CTAATACAGCTTTAACGTAGGTTGATGGATTGTAGAATGTTTCTGCACCAGCTTTTACCATTGGATATAAGTAATCTGCTGACAATCCATATAAAACAGTTATCACAACTGCAACGATTGCAATCGTAGTTAAATATTTGACGTCGACTTTGTTATTAAGATCATATCCTTTTGGTTGAC  >  USA300TCH1516_ALE/943397‑943576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.