| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 954365 = | 53 (0.540) | 7 (0.080) | 6/138 | NT | 13.1% | intergenic (+19/+484) | gluD/glpQ_1 | NAD‑specific glutamate dehydrogenase/Glycerophosphodiester phosphodiesterase |
| ? | USA300TCH1516_ALE | 954407 = | 47 (0.550) | intergenic (+61/+442) | gluD/glpQ_1 | NAD‑specific glutamate dehydrogenase/Glycerophosphodiester phosphodiesterase | |||||
TTTTGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/954465‑954365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagctcgttaaTTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG > USA300TCH1516_ALE/954407‑954496 TTTTGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCA < 1:2461110/91‑1 TTGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAG > 1:4020217/1‑91 TGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGC < 1:1512528/91‑1 GAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCT < 1:3064665/91‑1 AAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGT < 1:3400225/91‑1 AAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGT < 1:3323363/91‑1 AAGAGAGTGTTACACGGGCATTGTTCTACAGTCAACTACTGCTAAAATAAAATCAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGT < 1:3866703/91‑1 AGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTT > 1:2826492/1‑91 AGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTT > 1:2826683/1‑91 GAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTA > 1:667306/1‑91 GAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTA > 1:589994/1‑91 AGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAA > 1:883768/1‑91 GAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTT > 1:1203695/1‑91 AGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTC > 1:1221791/1‑91 AGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTC > 1:1222053/1‑91 GCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCA < 1:665366/91‑1 TAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAA > 1:3365306/1‑91 AGGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAA > 1:2839937/1‑91 GGGCTTTGTTTTCTGTCCCAAGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAAT > 1:2503511/1‑91 AGCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGA > 1:2837086/1‑91 GCTCGTTAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAG > 1:2042546/1‑91 TAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGT < 1:2138398/91‑1 TAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGT < 1:1985005/91‑1 TAATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGT < 1:1984976/91‑1 AATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTG < 1:1728834/91‑1 ATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAAGACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG < 1:3287681/91‑1 ATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAAGACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG < 1:3289794/91‑1 ATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG > 1:3950915/1‑91 ATTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG > 1:3951848/1‑91 TTTTGAAAAGAGCGTGTTACACGGGCATTGTTTTACAGTCAACTACTGCTAAAATAAAATTAACGAGCTTAGGGCTTTGTTTTCTGTCCCAAGCTCGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/954465‑954365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagctcgttaaTTTTATTTTAGCAGTAGTTGACTGTAAAACAATGCCCGTGTAACACGCTCTTTTCAAAAATAGTCGGGGCCCCAACACAGAGGCTGGTGG > USA300TCH1516_ALE/954407‑954496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |