| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 971402 | 96 (0.980) | 8 (0.090) | 6/142 | NT | 8.2% | intergenic (+30/+141) | USA300HOU_RS04810/cdr | hypothetical protein/Coenzyme A disulfide reductase |
| ? | USA300TCH1516_ALE | = 971425 | 95 (1.090) | intergenic (+53/+118) | USA300HOU_RS04810/cdr | hypothetical protein/Coenzyme A disulfide reductase | |||||
TCATCACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/971305‑971402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacataaggTCTTGGACTAATAATTGTCCATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATACCGAATAATTTTGATATAGGCCCTA < USA300TCH1516_ALE/971425‑971338 TCATCACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGA > 1:65732/1‑91 CATCACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGAC > 1:3436423/1‑91 CATCACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGAC > 1:3048676/1‑91 CATCACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGAC > 1:1689822/1‑91 CATCACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGAC > 1:1689343/1‑91 CATCACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGAC > 1:1689387/1‑91 ATCACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACA < 1:866253/91‑1 CACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATA > 1:2342264/1‑91 ACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGTCTAATTGATAAGACATATAGTATATGACATAA > 1:3527266/1‑91 ACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAA > 1:2802356/1‑91 ACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAA < 1:2928854/91‑1 CCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGTCTTGGACTAATAATTGTCCAT < 1:2220460/91‑1 CCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGTCTTGGACTAATAATTGTCCAT < 1:1128102/91‑1 CGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGTCTTGGACTAATAATTGTCCATG < 1:1342419/91‑1 GTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGTCTTGGACTAATAATTGTCCATGC < 1:734658/91‑1 GTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGTCTTGGACTAATAATTGTCCATGC < 1:3746580/91‑1 TTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGTCTTGGCCTAATAATTGTCCATGCC < 1:188198/91‑1 TAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGGTCTTGGACTAATAATTGTCCATGCCT < 1:3656169/91‑1 TGATAAGACATATAGTATATGACATAAGG‑CATGGAC‑‑‑‑AATTGTCCATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATACCGA < 1:4098631/91‑1 ACATAAGGTCTTGGACTAATAATTGTCCATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATACCGAATAATTTTGATATAGG < 1:1193826/91‑1 ACATAAGGTCTTGGACTAATAATTGTCCATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATACCGAATAATTTTGATATAGG < 1:747066/91‑1 ACATAAGGTCTTGGACTAATAATTGTCCATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATACCGAATAATTTTGATATAGG < 1:747115/91‑1 CATAAGGTCTTGGACTAATAATTGTCCATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATACCGAATAATTTTGATATAGGC < 1:1148813/91‑1 TAAGGTCTTGGACTAATAATTGTCCATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATACCGAATAATTTTGATATAGGCCC > 1:647786/1‑91 TAAGGTCTTGGACTAATAATTGTCAATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATCCCGAATAATTTTGATATAGGCCC > 1:1299198/1‑91 AGGTCTTGGACTAATAATTGTCCATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATACCGAATAATTTTGATATAGGCCCTA < 1:3692481/91‑1 TCATCACAATGGTATTAGGTGTCATTCTACCGTTAGGGCCTATATCAAAATTATTCGGTATTGGCTAATTGATAAGACATATAGTATATGACATAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/971305‑971402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacataaggTCTTGGACTAATAATTGTCCATGCCTTATGTCATATACTATATGTCTTATCAATTAGCCAATACCGAATAATTTTGATATAGGCCCTA < USA300TCH1516_ALE/971425‑971338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |