| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1005781 = | 113 (1.150) | 20 (0.240) | 10/138 | NT | 16.2% | intergenic (+417/+43) | pepF1_1/USA300HOU_RS04965 | Oligoendopeptidase F, plasmid/hypothetical protein |
| ? | USA300TCH1516_ALE | 1005817 = | 109 (1.290) | intergenic (+453/+7) | pepF1_1/USA300HOU_RS04965 | Oligoendopeptidase F, plasmid/hypothetical protein | |||||
TAAATATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1005881‑1005781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGG > USA300TCH1516_ALE/1005817‑1005906 TAAATATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAA < 1:1911308/91‑1 AATATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGTCCTCGTACACCATAAATGTAACG < 1:84435/91‑1 AATATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACG < 1:84617/91‑1 AATATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACG < 1:2143373/91‑1 ATATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGA > 1:2599349/1‑91 TATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAG > 1:1913044/1‑91 TATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAG > 1:3165661/1‑91 TATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAG > 1:3165894/1‑91 TATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAG > 1:3166225/1‑91 ATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGG < 1:704643/91‑1 ATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGG > 1:1421836/1‑91 TCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGT < 1:3254872/91‑1 TCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGT < 1:1904440/91‑1 TCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGT < 1:927170/91‑1 TCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGT < 1:965777/91‑1 CAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCT > 1:1505425/1‑91 CAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCT > 1:4027840/1‑91 CAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCT > 1:2950771/1‑91 CAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCT < 1:2471038/91‑1 CAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCT < 1:2471476/91‑1 AGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCTT < 1:3238127/91‑1 GATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCTTT > 1:3077122/1‑91 CAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTT > 1:1534021/1‑91 ATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAAT > 1:1796075/1‑91 ATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAAT > 1:1796503/1‑91 AAGACCTCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCT > 1:2524486/1‑91 CTCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATA > 1:863940/1‑91 CTCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATA > 1:1831095/1‑91 CTCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATA > 1:1831165/1‑91 TCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATAT > 1:585975/1‑91 TCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATAT > 1:712419/1‑91 TCGTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATAT > 1:585992/1‑91 GTACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTT > 1:2196287/1‑91 TACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTA > 1:3285500/1‑91 TACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTA > 1:3143593/1‑91 TACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTA > 1:2055418/1‑91 TACACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTA > 1:2703953/1‑91 CACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGTTTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGTTATTTAAG > 1:4040484/1‑91 CACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAG > 1:4040682/1‑91 CACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAG > 1:4040137/1‑91 ACCATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGT > 1:2563895/1‑91 CATAAATGTAACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAACTTT > 1:3728814/1‑91 ACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTT > 1:3089270/1‑91 ACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTT > 1:3338721/1‑91 AGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGT > 1:2645694/1‑91 AGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGT < 1:3925389/91‑1 AGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGT < 1:2063361/91‑1 GGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTT > 1:2895085/1‑91 GGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTT > 1:2895191/1‑91 GGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTT > 1:2358454/1‑91 GTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTG > 1:3194195/1‑91 TCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGA > 1:673334/1‑91 CTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAA > 1:2754061/1‑91 TTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAAT > 1:3788215/1‑91 TTTAATTTATTTATTATGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCCGGATATTTAAGTTTTTCAATTTTTTGTTGAAT > 1:3529577/1‑91 TTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATG < 1:2033979/91‑1 TAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGG > 1:3415823/1‑91 TAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGG > 1:3416015/1‑91 TAAATATCCAGATGGCGATTTCTGGAAATCTAAAATGCCTAAAATCAAATCAAAATAAATAAATTAAAGACCTCGTACACCATAAATGTAACGAGGTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1005881‑1005781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGG > USA300TCH1516_ALE/1005817‑1005906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |