BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1005781 =	113 (1.150)	20 (0.240)	10/138	NT	16.2%	intergenic (+417/+43)	pepF1_1/USA300HOU_RS04965	Oligoendopeptidase F, plasmid/hypothetical protein
*	?	USA300TCH1516_ALE	1005817 =	109 (1.290)	20 (0.240)	10/138	NT	16.2%	intergenic (+453/+7)	pepF1_1/USA300HOU_RS04965	Oligoendopeptidase F, plasmid/hypothetical protein

Only 100 of 184 total aligned reads displayed.

GATGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGG  >  USA300TCH1516_ALE/1005727‑1005906

gATGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTa                                                                                           >  1:1281258/1‑91 (MQ=255)

gATGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTa                                                                                           >  1:1893122/1‑91 (MQ=255)

 aTGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTaa                                                                                          >  1:1045793/1‑91 (MQ=255)

 aTGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTaa                                                                                          >  1:1207818/1‑91 (MQ=255)

  tgtgTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAat                                                                                         >  1:2823352/1‑91 (MQ=255)

   gtgtAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatt                                                                                        >  1:1779474/1‑91 (MQ=255)

   gtgtAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatt                                                                                        <  1:2700916/91‑1 (MQ=255)

    tgtAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAattt                                                                                       >  1:166942/1‑91 (MQ=255)

      atttctggaaatctaaaatgcctaaaatcaaatcaaaataaataaattAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttat                                                                                     >  1:1796503‑M1/49‑91 (MQ=255)

      atttctggaaatctaaaatgcctaaaatcaaatcaaaataaataaattAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttat                                                                                     >  1:1796075‑M1/49‑91 (MQ=255)

       aaCATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttatt                                                                                    <  1:3406518/91‑1 (MQ=255)

        aCATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttattt                                                                                   >  1:850339/1‑91 (MQ=255)

        aCATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttattt                                                                                   >  1:1402869/1‑91 (MQ=255)

         cATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGCCCTCGTTACATTTATGGTGTACGAGGTCTTTAatttattta                                                                                  >  1:942572/1‑91 (MQ=255)

         cATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttattta                                                                                  <  1:3467009/91‑1 (MQ=255)

            tACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAatttatttattt                                                                               <  1:1096383/91‑1 (MQ=255)

             aCGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTAtttt                                                                              >  1:2162025/1‑91 (MQ=255)

             aCGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTAtttt                                                                              >  1:2730663/1‑91 (MQ=255)

             aCGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTAtttt                                                                              >  1:175393/1‑91 (MQ=255)

             aCGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTAtttt                                                                              >  1:3262727/1‑91 (MQ=255)

              cGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttg                                                                             >  1:205127/1‑91 (MQ=255)

              aaatctaaaatgcctaaaatcaaatcaaaataaataaattAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttg                                                                             >  1:1534021‑M1/41‑91 (MQ=255)

               gTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttga                                                                            >  1:951355/1‑91 (MQ=255)

                ttCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgat                                                                           <  1:35715/91‑1 (MQ=255)

                 tCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgatt                                                                          >  1:1690569/1‑91 (MQ=255)

                 tCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgatt                                                                          >  1:3546926/1‑91 (MQ=255)

                   taataaTTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATtttgatttg                                                                        >  1:2403490/1‑91 (MQ=255)

                    aataatTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATttcgatttga                                                                       >  1:2078377/1‑91 (MQ=255)

                    aataatTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATttcgatttga                                                                       >  1:2078117/1‑91 (MQ=255)

                    aataatTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATttagatttga                                                                       >  1:2078235/1‑91 (MQ=255)

                       aatTTAATGTTGCAAAATTAAGAGTCAGTGAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTgatttgattt                                                                    <  1:2038384/91‑1 (MQ=255)

                           tAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAgg                                                                <  1:1802150/91‑1 (MQ=255)

                             aTGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCa                                                              <  1:1398526/91‑1 (MQ=255)

                               gTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCAtt                                                            <  1:3338959/91‑1 (MQ=255)

                               gTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCAtt                                                            <  1:4067986/91‑1 (MQ=255)

                               gTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCAtt                                                            <  1:3889741/91‑1 (MQ=255)

                                  gCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTa                                                         >  1:3132609/1‑91 (MQ=255)

                                  gCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTa                                                         >  1:855515/1‑91 (MQ=255)

                                      aaTTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGAtt                                                     <  1:1802649/91‑1 (MQ=255)

                                       caaaataaataaattaaagacctcgtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGAttt                                                    >  1:1534021‑M2/52‑91 (MQ=255)

                                       aTTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGAttt                                                    <  1:3078245/91‑1 (MQ=255)

                                        ttAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTc                                                   >  1:1618168/1‑91 (MQ=255)

                                         tAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTcc                                                  >  1:1675761/1‑91 (MQ=255)

                                            gagTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGa                                               >  1:3046182/1‑91 (MQ=255)

                                            gagTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGa                                               >  1:3928857/1‑91 (MQ=255)

                                            gagTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGa                                               >  1:55126/1‑91 (MQ=255)

                                            gagTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGa                                               >  1:1323055/1‑91 (MQ=255)

                                              gTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGaaa                                             <  1:3609090/91‑1 (MQ=255)

                                              gTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGaaa                                             <  1:3009065/91‑1 (MQ=255)

                                              gTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGaaa                                             <  1:1228560/91‑1 (MQ=255)

                                               tCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAAt                                            <  1:74364/91‑1 (MQ=255)

                                                cAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATc                                           >  1:3815815/1‑91 (MQ=255)

                                                  gTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGc                                         <  1:1022899/91‑1 (MQ=255)

                                                  gTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGc                                         <  1:3651863/91‑1 (MQ=255)

                                                  gTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGc                                         <  1:3652421/91‑1 (MQ=255)

                                                  gTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGc                                         <  1:490799/91‑1 (MQ=255)

                                                  gTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGc                                         <  1:1022836/91‑1 (MQ=255)

                                                  gTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGc                                         >  1:2952404/1‑91 (MQ=255)

                                                  gTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGc                                         >  1:2952384/1‑91 (MQ=255)

                                                  gTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGc                                         <  1:220195/91‑1 (MQ=255)

                                                  gTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGc                                         <  1:2683929/91‑1 (MQ=255)

                                                       aagacctcgtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCt                                    >  1:2524486‑M2/36‑91 (MQ=255)

                                                       AAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCt                                    <  1:3238127‑M1/91‑1 (MQ=255)

                                                        AGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTg                                   >  1:4027840‑M1/1‑91 (MQ=255)

                                                        AGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTg                                   >  1:2950771‑M1/1‑91 (MQ=255)

                                                        AGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTg                                   <  1:2471038‑M1/91‑1 (MQ=255)

                                                          ACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGa                                 <  1:965777‑M1/91‑1 (MQ=255)

                                                          ACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGa                                 <  1:927170‑M1/91‑1 (MQ=255)

                                                          ACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGa                                 <  1:1904440‑M1/91‑1 (MQ=255)

                                                           CCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGat                                <  1:704643‑M1/91‑1 (MQ=255)

                                                            ctcgtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGata                               >  1:1831165‑M2/31‑91 (MQ=255)

                                                            CTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGata                               >  1:3165661‑M1/1‑91 (MQ=255)

                                                            CTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGata                               >  1:3166225‑M1/1‑91 (MQ=255)

                                                            CTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGata                               >  1:1913044‑M1/1‑91 (MQ=255)

                                                             tcgtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGatat                              >  1:585992‑M2/30‑91 (MQ=255)

                                                             tcgtacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGatat                              >  1:585975‑M2/30‑91 (MQ=255)

                                                             TCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGatat                              >  1:2599349‑M1/1‑91 (MQ=255)

                                                              CGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATAtt                             <  1:84617‑M1/91‑1 (MQ=255)

                                                              CGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATAtt                             <  1:2143373‑M1/91‑1 (MQ=255)

                                                                tacaccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTa                           >  1:3143593‑M2/27‑91 (MQ=255)

                                                                  caccataaatgtaacgaggtctttAATTTATTTATTTTGATTTGTTTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGTTATTTAAg                         >  1:4040484‑M2/25‑91 (MQ=255)

                                                                      ttATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGtttt                     <  1:2732137/91‑1 (MQ=255)

                                                                      ttATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGtttt                     <  1:1423748/91‑1 (MQ=255)

                                                                      ttATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGtttt                     <  1:573937/91‑1 (MQ=255)

                                                                      ttATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGtttt                     <  1:573678/91‑1 (MQ=255)

                                                                       tATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGttttt                    <  1:81304/91‑1 (MQ=255)

                                                                       tATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGttttt                    <  1:3100765/91‑1 (MQ=255)

                                                                        aTGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTc                   <  1:1501495/91‑1 (MQ=255)

                                                                        aTGGTGTACGAGGACTTTAATTTATTTATTTTGATTTGATTTTGGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTc                   <  1:4148454/91‑1 (MQ=255)

                                                                         tGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCa                  <  1:3687010/91‑1 (MQ=255)

                                                                             gtACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAAttt              <  1:3568471/91‑1 (MQ=255)

                                                                               acgaggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAAttttt            >  1:3338721‑M2/12‑91 (MQ=255)

                                                                                  aggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTttgt         <  1:2063361‑M2/83‑1 (MQ=255)

                                                                                  aggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTttgt         >  1:2645694‑M2/9‑91 (MQ=255)

                                                                                   ggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTttgtt        >  1:2358454‑M2/8‑91 (MQ=255)

                                                                                   ggtctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTttgtt        >  1:2895085‑M2/8‑91 (MQ=255)

                                                                                     tctttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGa      >  1:673334‑M2/6‑91 (MQ=255)

                                                                                       tttAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAAt    >  1:3788215‑M2/4‑91 (MQ=255)

                                                                                       tttAATTTATTTATTATGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCCGGATATTTAAGTTTTTCAATTTTTTGTTGAAt    >  1:3529577‑M2/4‑91 (MQ=255)

                                                                                         tAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATgg  >  1:3415823‑M2/2‑91 (MQ=255)

GATGTGTAACATTACGTTCTAATAATTTAATGTTGCAAAATTAAGAGTCAGTAAAAAGACCTCGTTACATTTATGGTGTACGAGGTCTTTAATTTATTTATTTTGATTTGATTTTAGGCATTTTAGATTTCCAGAAATCGCCATCTGGATATTTAAGTTTTTCAATTTTTTGTTGAATGG  >  USA300TCH1516_ALE/1005727‑1005906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.