| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1032068 | 71 (0.720) | 7 (0.080) | 7/146 | NT | 9.7% | coding (1056/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN |
| ? | USA300TCH1516_ALE | = 1032096 | 66 (0.740) | coding (1084/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN | |||||
TGGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1031972‑1032068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtccacTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCGAA < USA300TCH1516_ALE/1032096‑1032008 TGGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGT > 1:2111284/1‑91TGGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGT > 1:242954/1‑91 GGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTG < 1:35667/91‑1 GGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTG < 1:3474164/91‑1 GGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTG < 1:1264460/91‑1 GTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTC > 1:1968825/1‑91 GTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTC > 1:2093606/1‑91 TTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCC > 1:1909239/1‑91 ATCCATTTTCGCAGTTATTACATGATGCAATTCACCTTGCATTGGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATA < 1:4142597/91‑1 ATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCA < 1:30086/91‑1 TTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACG < 1:1920832/91‑1 TCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTG < 1:2659565/91‑1 AATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATCTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACA < 1:2823103/91‑1 TATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACAT < 1:2871349/91‑1 ATGCAATTCACCTTGCATTTGATAATGATATAACATCTGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCA < 1:1992745/91‑1 TGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATT > 1:229595/1‑91 TGTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATT > 1:3495405/1‑91 GTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTG < 1:2388556/91‑1 GTCCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTG < 1:3842787/91‑1 CCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG > 1:3035872/1‑91 CCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG < 1:3057875/91‑1 CCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG < 1:1384231/91‑1 CCACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCG < 1:1383675/91‑1 ACTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCGAA < 1:3701063/91‑1 TGGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1031972‑1032068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtccacTCAACCCCTTCTCTCCGTTCATAGGCACGTGGACACATGTTATATCATTATCAAATGCAAGGTGAATTGCATCATGTAATAATTGCGAA < USA300TCH1516_ALE/1032096‑1032008 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |