| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1032068 | 71 (0.720) | 7 (0.080) | 7/146 | NT | 9.7% | coding (1056/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN |
| ? | USA300TCH1516_ALE | = 1032096 | 66 (0.740) | coding (1084/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN | |||||
TTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCAAAG > USA300TCH1516_ALE/1032008‑1032186 | ttCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgt < 1:3701063‑M2/91‑3 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg < 1:1383675‑M2/91‑5 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg < 1:1384231‑M2/91‑5 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg > 1:3035872‑M2/1‑87 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg < 1:3057875‑M2/91‑5 (MQ=255) cAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggac < 1:3842787‑M2/91‑7 (MQ=255) cAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggac < 1:2388556‑M2/91‑7 (MQ=255) aaTTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggaca > 1:3495405‑M2/1‑84 (MQ=255) aaTTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggaca > 1:229595‑M2/1‑84 (MQ=255) attattACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAg > 1:952546/1‑91 (MQ=255) attaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGAtt < 1:2918240/91‑1 (MQ=255) ttaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTc < 1:3379500/91‑1 (MQ=255) ttaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCATATGAACGGAGAGAAGGGGTTGAGTGGACAGATTc < 1:1732530/91‑1 (MQ=255) aCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGa < 1:2340841/91‑1 (MQ=255) atgatgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGaaa < 1:291147/91‑1 (MQ=255) atgatgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGaaa < 1:3766966/91‑1 (MQ=255) atgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGa < 1:2270478/91‑1 (MQ=255) gCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAg < 1:508885/91‑1 (MQ=255) gaattGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTa > 1:1787957/4‑91 (MQ=255) aCCTTGCATTTGATAGTGATATAACATGCGTCCACGTGCATATGAACGGAGCGCAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTa > 1:1330328/1‑91 (MQ=255) ccTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTAt < 1:2333809/91‑1 (MQ=255) cTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATc > 1:2205904/1‑91 (MQ=255) cTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATc < 1:3515346/91‑1 (MQ=255) ttGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCa < 1:1871390/91‑1 (MQ=255) gCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATg > 1:976948/1‑91 (MQ=255) gCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATg > 1:977004/1‑91 (MQ=255) aTTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCa > 1:847883/1‑91 (MQ=255) ttGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATa > 1:1670751/1‑91 (MQ=255) ttGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATa < 1:14571/91‑1 (MQ=255) aTAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATAccc > 1:3616463/1‑91 (MQ=255) aTAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATAccc > 1:426603/1‑91 (MQ=255) aaTGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCat > 1:1960737/1‑91 (MQ=255) aaTGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCat > 1:1960014/1‑91 (MQ=255) aaTGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCat > 1:861444/1‑91 (MQ=255) tGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacagatgttatatcattatcaaatgcaaggtgaattgcat < 1:1992745‑M2/91‑45 (MQ=255) gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc < 1:2033441/91‑1 (MQ=255) gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc > 1:3239538/1‑91 (MQ=255) gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc < 1:4096226/91‑1 (MQ=255) gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc < 1:1409811/91‑1 (MQ=255) atatAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATcc < 1:121131/91‑1 (MQ=255) ataACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAg < 1:2695769/91‑1 (MQ=255) aCATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATa < 1:2193066/91‑1 (MQ=255) aTGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaata < 1:2871349‑M2/91‑54 (MQ=255) aTGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAg < 1:1049976/91‑1 (MQ=255) aTGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAg > 1:2799969/1‑91 (MQ=255) aTGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAg > 1:1356821/1‑91 (MQ=255) gtgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGcc < 1:825917/91‑1 (MQ=255) gtgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGcc < 1:2913622/91‑1 (MQ=255) gtgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGcc < 1:79787/91‑1 (MQ=255) tgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacagatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataatt < 1:2823103‑M2/91‑57 (MQ=255) gtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCaa < 1:1434199/91‑1 (MQ=255) gtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCaa < 1:2220518/91‑1 (MQ=255) ccACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATg > 1:1639944/1‑91 (MQ=255) ccACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATg > 1:3376753/1‑91 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcga < 1:2659565‑M2/91‑61 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATgg < 1:1048251/91‑1 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATgg > 1:4092924/1‑91 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATgg < 1:3571780/91‑1 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATgg < 1:3571224/91‑1 (MQ=255) aCGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGa < 1:3331772/91‑1 (MQ=255) cGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcgaaa < 1:1920832‑M2/91‑63 (MQ=255) cGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGat < 1:355758/91‑1 (MQ=255) cGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGat < 1:759835/91‑1 (MQ=255) tGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcgaaaat < 1:30086‑M2/91‑65 (MQ=255) tGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGatat < 1:520079/91‑1 (MQ=255) gCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATg < 1:1182047/91‑1 (MQ=255) gCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATg < 1:3581377/91‑1 (MQ=255) gCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATg < 1:2654810/91‑1 (MQ=255) ccTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGa < 1:1090611/91‑1 (MQ=255) tATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatccaatgcaaggtgaattgcatcatgtaataactgcgaaaatggat < 1:4142597‑M2/91‑69 (MQ=255) tGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAAt > 1:1873139/1‑91 (MQ=255) tGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAAt < 1:660392/91‑1 (MQ=255) cGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGt < 1:3886824/91‑1 (MQ=255) gagagaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTgg < 1:1347745/91‑1 (MQ=255) gagagaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTgg < 1:4007073/91‑1 (MQ=255) agagaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGt < 1:2474331/91‑1 (MQ=255) gagaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTc > 1:3354159/1‑91 (MQ=255) gagaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTc > 1:827674/1‑91 (MQ=255) agaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCa < 1:606533/91‑1 (MQ=255) agaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCa < 1:606534/91‑1 (MQ=255) gaAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCaa < 1:847579/91‑1 (MQ=255) aGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCaaaa > 1:3886496/1‑91 (MQ=255) ggggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAat < 1:1491445/91‑1 (MQ=255) ggggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAat < 1:1507367/91‑1 (MQ=255) ggggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAat > 1:264398/1‑91 (MQ=255) gggTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAata > 1:1685801/1‑91 (MQ=255) gTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATc < 1:2570189/91‑1 (MQ=255) tGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATACAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCaa > 1:4134253/1‑91 (MQ=255) gAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCaaa < 1:2197790/91‑1 (MQ=255) aGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCAAAg > 1:2124726/1‑91 (MQ=255) aGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCAAAg > 1:2124300/1‑91 (MQ=255) aGTGGACAGATTCGAAACGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCAAAg < 1:2645277/91‑1 (MQ=255) | TTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGATATGACAATTAGTGGTCAAAATATCAAAG > USA300TCH1516_ALE/1032008‑1032186 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |