| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1032068 | 71 (0.720) | 7 (0.080) | 7/146 | NT | 9.7% | coding (1056/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN |
| ? | USA300TCH1516_ALE | = 1032096 | 66 (0.740) | coding (1084/1515 nt) | yfkN_2 | Trifunctional nucleotide phosphoesterase protein YfkN | |||||
Only 100 of 117 total aligned reads displayed.
CAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGAT > USA300TCH1516_ALE/1031979‑1032158 | cAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACg < 1:2829654/91‑1 (MQ=255) aaGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGt < 1:3098347/91‑1 (MQ=255) aGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTg < 1:3786759/91‑1 (MQ=255) aGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTg < 1:4122318/91‑1 (MQ=255) aGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTg < 1:4123586/91‑1 (MQ=255) gATTTAGCCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTgt < 1:2076886/91‑2 (MQ=255) aTTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGca < 1:1656123/91‑2 (MQ=255) tttAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCt < 1:1152465/91‑1 (MQ=255) tttAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCt < 1:289752/91‑1 (MQ=255) tttAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCt < 1:3136363/91‑1 (MQ=255) gTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGa > 1:174677/1‑91 (MQ=255) cTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAAc < 1:1263076/91‑1 (MQ=255) gTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACgg < 1:3448902/91‑1 (MQ=255) gTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACgg > 1:3248385/1‑91 (MQ=255) gTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACgg > 1:3248454/1‑91 (MQ=255) gTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACgg < 1:3449022/91‑1 (MQ=255) gTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACgg < 1:3045244/91‑1 (MQ=255) aaaCACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGgaga < 1:2142073/91‑1 (MQ=255) aaaCACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGgaga > 1:1857327/1‑91 (MQ=255) aaaCACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGgaga < 1:79882/91‑1 (MQ=255) cacaTCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGaa > 1:851483/1‑91 (MQ=255) acaTCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAg < 1:2107474/91‑1 (MQ=255) caTCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAgg > 1:1555663/1‑91 (MQ=255) caTCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAgg > 1:1463338/1‑91 (MQ=255) aTCCATTTTCGCAGTTATTACATGATGCAATTCACCTTGCATTGGATAATGATATAACATGTGTCCACtcaaccccttctctccgttcata < 1:4142597‑M1/91‑24 (MQ=255) tCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGCGAGAAgggg > 1:3974586/1‑91 (MQ=255) tCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAgggg > 1:2716161/1‑91 (MQ=255) tCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAgggg < 1:3774351/91‑1 (MQ=255) tCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAgggg > 1:157261/1‑91 (MQ=255) ccATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGt < 1:2649470/91‑1 (MQ=255) ccATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGt > 1:1723581/1‑91 (MQ=255) ccATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGt > 1:1723033/1‑91 (MQ=255) cATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGtt > 1:3887386/1‑91 (MQ=255) cATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGtt < 1:479999/91‑1 (MQ=255) aTTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACtcaaccccttctctccgttcataggca < 1:30086‑M1/91‑28 (MQ=255) aTTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTg < 1:755643/91‑1 (MQ=255) tttCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACtcaaccccttctctccgttcataggcacg < 1:1920832‑M1/91‑30 (MQ=255) ttCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgt < 1:3701063‑M2/91‑3 (MQ=255) tCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACtcaaccccttctctccgttcataggcacgtg < 1:2659565‑M1/91‑32 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg > 1:3035872‑M2/1‑87 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg < 1:3057875‑M2/91‑5 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg < 1:1383675‑M2/91‑5 (MQ=255) cGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtgg < 1:1384231‑M2/91‑5 (MQ=255) cAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggac < 1:2388556‑M2/91‑7 (MQ=255) cAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggac < 1:3842787‑M2/91‑7 (MQ=255) aaTTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggaca > 1:3495405‑M2/1‑84 (MQ=255) aaTTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggaca > 1:229595‑M2/1‑84 (MQ=255) attattACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAg > 1:952546/1‑91 (MQ=255) tattaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACtcaaccccttctctccgttcataggcacgtggacacat < 1:2871349‑M1/91‑39 (MQ=255) attaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGAtt < 1:2918240/91‑1 (MQ=255) ttaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTc < 1:3379500/91‑1 (MQ=255) ttaCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCATATGAACGGAGAGAAGGGGTTGAGTGGACAGATTc < 1:1732530/91‑1 (MQ=255) aCATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGa < 1:2340841/91‑1 (MQ=255) atgatgCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGaaa < 1:3766966/91‑1 (MQ=255) atgCAATTCACCTTGCATTTGATAATGATATAACATCTGTCCACtcaaccccttctctccgttcataggcacgtggacacatgttatatca < 1:1992745‑M1/91‑48 (MQ=255) gCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAg < 1:508885/91‑1 (MQ=255) gaattGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTa > 1:1787957/4‑91 (MQ=255) aCCTTGCATTTGATAGTGATATAACATGCGTCCACGTGCATATGAACGGAGCGCAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTa > 1:1330328/1‑91 (MQ=255) ccTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTAt < 1:2333809/91‑1 (MQ=255) cTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATc > 1:2205904/1‑91 (MQ=255) gCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATg > 1:976948/1‑91 (MQ=255) aTTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCa > 1:847883/1‑91 (MQ=255) ttGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATa > 1:1670751/1‑91 (MQ=255) aTAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATAccc > 1:3616463/1‑91 (MQ=255) aaTGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCat > 1:1960737/1‑91 (MQ=255) aaTGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCat > 1:1960014/1‑91 (MQ=255) aaTGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCat > 1:861444/1‑91 (MQ=255) tGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacagatgttatatcattatcaaatgcaaggtgaattgcat < 1:1992745‑M2/91‑45 (MQ=255) gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc < 1:1409811/91‑1 (MQ=255) gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc < 1:4096226/91‑1 (MQ=255) gATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATc > 1:3239538/1‑91 (MQ=255) atatAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATcc < 1:121131/91‑1 (MQ=255) ataACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAg < 1:2695769/91‑1 (MQ=255) aCATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATa < 1:2193066/91‑1 (MQ=255) aTGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaata < 1:2871349‑M2/91‑54 (MQ=255) aTGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAg > 1:2799969/1‑91 (MQ=255) aTGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAg < 1:1049976/91‑1 (MQ=255) gtgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGcc < 1:79787/91‑1 (MQ=255) gtgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGcc < 1:2913622/91‑1 (MQ=255) tgtCCACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataatt > 1:3495405‑M1/1‑7 (MQ=255) tgtCCACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataatt > 1:229595‑M1/1‑7 (MQ=255) tgtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacagatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataatt < 1:2823103‑M2/91‑57 (MQ=255) gtCCACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattg < 1:3842787‑M1/91‑86 (MQ=255) gtCCACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattg < 1:2388556‑M1/91‑86 (MQ=255) gtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCaa < 1:2220518/91‑1 (MQ=255) gtCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCaa < 1:1434199/91‑1 (MQ=255) ccACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcg > 1:3035872‑M1/1‑4 (MQ=255) ccACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcg < 1:1384231‑M1/91‑88 (MQ=255) ccACtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcg < 1:1383675‑M1/91‑88 (MQ=255) ccACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATg > 1:3376753/1‑91 (MQ=255) ccACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATg > 1:1639944/1‑91 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcga < 1:2659565‑M2/91‑61 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATgg < 1:1048251/91‑1 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATgg < 1:3571224/91‑1 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATgg < 1:3571780/91‑1 (MQ=255) cACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATgg > 1:4092924/1‑91 (MQ=255) aCtcaaccccttctctccgttcataggcacgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcgaa < 1:3701063‑M1/91‑90 (MQ=255) cGTGCCTATGAACGGAGAGAAGGGGTTGAgtggacacatgttatatcattatcaaatgcaaggtgaattgcatcatgtaataattgcgaaa < 1:1920832‑M2/91‑63 (MQ=255) cGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGat < 1:759835/91‑1 (MQ=255) cGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGat < 1:355758/91‑1 (MQ=255) | CAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCACCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATGGAT > USA300TCH1516_ALE/1031979‑1032158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |