| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1040357 = | 101 (1.030) | 23 (0.280) | 11/132 | NT | 23.4% | intergenic (+18/+70) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1040412 = | 67 (0.830) | intergenic (+73/+15) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein | |||||
GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1040460‑1040357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTG > USA300TCH1516_ALE/1040412‑1040501 GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCAT > 1:1475813/1‑91 CTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT > 1:3670522/1‑91 TTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGA > 1:819018/1‑91 TTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACGTTTCCCATTGAT < 1:3179672/91‑1 TTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTG < 1:1731901/91‑1 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATagg > 1:3582751/1‑88 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG < 1:94319/91‑1 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG < 1:2636755/91‑1 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG < 1:3568291/91‑1 TCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGC < 1:151183/91‑1 TCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGC < 1:2587249/91‑1 CAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCT < 1:1742147/91‑1 CAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCT < 1:1742497/91‑1 CAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCT < 1:1967113/91‑1 CAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCT < 1:1969416/91‑1 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 1:1501516/1‑91 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 1:762901/1‑91 AGTATGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCAATTGATTGGCTT > 1:4099119/1‑91 GTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTT > 1:914498/1‑91 TTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTaag < 1:290918/91‑4 TATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGC > 1:1624613/1‑91 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGA > 1:1114/1‑91 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGCTATGAAAGTAACAACGGCAAACTGA > 1:1864/1‑91 CCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAA > 1:38097/1‑91 CCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACCGAA > 1:3739317/1‑91 CCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACAGAA > 1:3739348/1‑91 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAA > 1:2023749/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAA > 1:14719/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAA > 1:2074399/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAA > 1:2077273/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAA > 1:2075413/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:2448625/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:1627390/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:1837127/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:2448249/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:2448264/1‑91 AACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGC > 1:3843057/1‑91 ACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAACGCA > 1:3265058/1‑91 ACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCA > 1:203918/1‑91 ACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCA > 1:2496351/1‑91 CGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAA > 1:1410148/1‑91 GGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAAT > 1:2031545/1‑91 AGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAATAAGCAATAT > 1:3962715/1‑91 TGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAA > 1:2126481/1‑91 GATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAAT < 1:2682488/91‑1 ATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATA > 1:1055654/1‑91 ATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATA > 1:3213317/1‑91 TGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAA > 1:3323157/1‑91 GGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAAT > 1:2854322/1‑91 GGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAAT > 1:2854151/1‑91 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGT > 1:3962883/1‑91 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGT < 1:2139717/91‑1 TTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAA < 1:830245/91‑1 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAT < 1:2933496/91‑1 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAT < 1:1502862/91‑1 ATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTG > 1:1431474/1‑91 ATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTG > 1:2752315/1‑91 GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1040460‑1040357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTG > USA300TCH1516_ALE/1040412‑1040501 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |