| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1040357 = | 101 (1.030) | 23 (0.280) | 11/132 | NT | 23.4% | intergenic (+18/+70) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1040412 = | 67 (0.830) | intergenic (+73/+15) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein | |||||
Only 100 of 148 total aligned reads displayed.
TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGC > USA300TCH1516_ALE/1040267‑1040445 | tGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAAtt < 1:3918699/91‑1 (MQ=255) gATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTa > 1:995738/1‑91 (MQ=255) attacatttattactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTaa < 1:1502862‑M1/3‑1 (MQ=255) attacatttattactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTaa < 1:2933496‑M1/3‑1 (MQ=255) atatGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTaa > 1:2605166/1‑91 (MQ=255) atatCGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTaa < 1:3456489/91‑1 (MQ=255) ttacatttattactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTaaa < 1:830245‑M1/4‑1 (MQ=255) atGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTaaaa > 1:455024/1‑91 (MQ=255) acatttattactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAg > 1:3962883‑M1/86‑91 (MQ=255) acatttattactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAg < 1:2139717‑M1/6‑1 (MQ=255) ggCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGc < 1:479751/91‑1 (MQ=255) ggCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGc < 1:2148917/91‑1 (MQ=255) ggCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGc < 1:2148916/91‑1 (MQ=255) gCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGcc < 1:2332329/91‑1 (MQ=255) atttattactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGcc > 1:2854151‑M1/84‑91 (MQ=255) tttattactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCca > 1:3323157‑M1/83‑91 (MQ=255) tattactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCcaat > 1:1055654‑M1/81‑91 (MQ=255) tattactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCcaat > 1:3213317‑M1/81‑91 (MQ=255) ttactaatcgtattaaatattattatattgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCcaatca > 1:2126481‑M1/79‑91 (MQ=255) gCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCcaatcaa < 1:2253538/91‑1 (MQ=255) aaaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATg < 1:2855485/91‑1 (MQ=255) aaaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATg < 1:3742256/91‑1 (MQ=255) aaaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATg < 1:3827006/91‑1 (MQ=255) aaTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATgg > 1:2721661/1‑91 (MQ=255) aTCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATggg < 1:740612/91‑1 (MQ=255) aaTGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGaaa < 1:3106507/91‑1 (MQ=255) aaTGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGaaa < 1:3104666/91‑1 (MQ=255) aaTGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGaaa > 1:467525/1‑91 (MQ=255) aTGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAAt > 1:881428/1‑91 (MQ=255) gtgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGt > 1:3992408/1‑91 (MQ=255) gtgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGt < 1:3345475/91‑1 (MQ=255) tgACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGtt > 1:315306/1‑91 (MQ=255) gACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTg < 1:2018343/91‑1 (MQ=255) gAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACt < 1:1307576/91‑1 (MQ=255) aaaTAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGaagt < 1:460541/91‑4 (MQ=255) aataatAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTc > 1:3902538/1‑91 (MQ=255) ataataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCa < 1:1705814/91‑1 (MQ=255) taataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCaa < 1:4031637/91‑1 (MQ=255) aataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAac > 1:283859/1‑91 (MQ=255) aataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAac > 1:283806/1‑91 (MQ=255) aataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAac > 1:2002873/1‑91 (MQ=255) ataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAaca > 1:2278790/1‑91 (MQ=255) ataGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAaca > 1:2278733/1‑91 (MQ=255) taGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAacac < 1:1687738/91‑1 (MQ=255) aGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACt > 1:3135905/1‑91 (MQ=255) gATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTc < 1:2017403/91‑1 (MQ=255) attgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTcc > 1:2031545‑M1/53‑91 (MQ=255) tttAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCg < 1:2773499/91‑1 (MQ=255) tttAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCg > 1:35661/1‑91 (MQ=255) ttgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCg > 1:1410148‑M1/52‑91 (MQ=255) tgctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGt > 1:2496351‑M1/51‑91 (MQ=255) tgcgttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGt > 1:3265058‑M1/51‑91 (MQ=255) gctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGtt > 1:3843057‑M1/50‑91 (MQ=255) ctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGttt > 1:1627390‑M1/49‑91 (MQ=255) ctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGttt > 1:2448625‑M1/49‑91 (MQ=255) ctttttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGttt > 1:2448249‑M1/49‑91 (MQ=255) tttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAt > 1:2074399‑M1/46‑91 (MQ=255) tttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAt > 1:2075413‑M1/46‑91 (MQ=255) tttttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAt > 1:14719‑M1/46‑91 (MQ=255) aCAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAt > 1:2617850/1‑91 (MQ=255) aCAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAt > 1:2539885/1‑91 (MQ=255) aCAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAt < 1:1636507/91‑1 (MQ=255) aCAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAt < 1:4085209/91‑1 (MQ=255) cAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAtt > 1:3033582/1‑91 (MQ=255) cAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGAtt > 1:723752/1‑91 (MQ=255) tttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTg > 1:2023749‑M1/44‑91 (MQ=255) ttcggtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTgg > 1:3739317‑M1/43‑91 (MQ=255) ttcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTgg > 1:38097‑M1/43‑91 (MQ=255) gTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTgg < 1:1265269/91‑1 (MQ=255) tcagtttgccgttgttactttcatagcttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGc > 1:1864‑M1/42‑91 (MQ=255) tcagtttgccgttgttactttcataacttagtaacacagtaTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGc > 1:1114‑M1/42‑91 (MQ=255) aGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCttt < 1:179273/91‑1 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCtttt > 1:3712864/1‑91 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCtttt > 1:3411856/1‑91 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCtttt > 1:3366417/1‑91 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCtttt > 1:3364963/1‑91 (MQ=255) gAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCtttt > 1:863760/1‑91 (MQ=255) aaaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat < 1:2854365/91‑1 (MQ=255) aaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtata < 1:1503238/91‑1 (MQ=255) aaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtata > 1:734976/1‑91 (MQ=255) aGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATAc > 1:1252123/1‑91 (MQ=255) gTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACt > 1:1472375/1‑91 (MQ=255) gTAGCATCTATGCGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACt > 1:3206718/1‑91 (MQ=255) tAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtg > 1:2481519/1‑91 (MQ=255) aGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTCTGATTGGCTTTCATACtgt > 1:2080349/1‑91 (MQ=255) gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgtg > 1:1038448/1‑91 (MQ=255) gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgtg > 1:769527/1‑91 (MQ=255) gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgtg > 1:769330/1‑91 (MQ=255) gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgtg > 1:2693273/1‑91 (MQ=255) gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgtg > 1:2834035/1‑91 (MQ=255) aTCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGtt > 1:2758564/1‑91 (MQ=255) aTCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGtt < 1:3278535/91‑1 (MQ=255) aTCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGtt > 1:787839/1‑91 (MQ=255) tATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACt < 1:623168/91‑1 (MQ=255) tATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACt < 1:2432392/91‑1 (MQ=255) tgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGt < 1:2869362/91‑1 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt < 1:1739914/91‑1 (MQ=255) aGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGATATGAAAGTaa > 1:3758026/1‑91 (MQ=255) gATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaac < 1:981507/91‑1 (MQ=255) aTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGc < 1:3461934/91‑1 (MQ=255) | TGATATGGCTATTGCAAATCAATGTGACGAAATAATAGATTTAGAACAGTATAGAAAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGC > USA300TCH1516_ALE/1040267‑1040445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |