| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1058102 = | 92 (0.940) | 5 (0.060) | 4/144 | NT | 6.6% | intergenic (+143/+64) | slyA_2/atl_1 | Transcriptional regulator SlyA/Bifunctional autolysin |
| ? | USA300TCH1516_ALE | 1058152 = | 59 (0.670) | intergenic (+193/+14) | slyA_2/atl_1 | Transcriptional regulator SlyA/Bifunctional autolysin | |||||
GCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1058197‑1058102‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCA > USA300TCH1516_ALE/1058152‑1058241 GCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTT < 1:111172/91‑1 CAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTG < 1:1259648/91‑1 AAATACTTCGACGTCCCACAATATAAATTAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA < 1:1153682/91‑1 AAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA > 1:1172561/1‑91 AAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA > 1:1598249/1‑91 AAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGA < 1:2259987/91‑1 AATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGAT > 1:1441436/1‑91 AATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGAT < 1:2007715/91‑1 TACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC < 1:434039/91‑1 TAAATAAGCAACATGAACATAGGATC‑AAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTA > 1:299129/1‑91 ATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATT > 1:1941753/1‑91 AAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCC > 1:220000/1‑91 TCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACT > 1:454664/1‑91 TCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACT > 1:751290/1‑91 TTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGAT < 1:1341050/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 1:1070758/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 1:2336153/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 1:2439381/91‑1 GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTT < 1:1751029/91‑1 CCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGC > 1:1763557/1‑91 CTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCA > 1:2441931/1‑91 GCAAATACTTCGACATCCCACAATATAAATAAGCAACATGAACATAGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1058197‑1058102‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgatccTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCA > USA300TCH1516_ALE/1058152‑1058241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |