BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1058102 =	92 (0.940)	5 (0.060)	4/144	NT	6.6%	intergenic (+143/+64)	slyA_2/atl_1	Transcriptional regulator SlyA/Bifunctional autolysin
*	?	USA300TCH1516_ALE	1058152 =	59 (0.670)	5 (0.060)	4/144	NT	6.6%	intergenic (+193/+14)	slyA_2/atl_1	Transcriptional regulator SlyA/Bifunctional autolysin

Only 100 of 110 total aligned reads displayed.

GAATCATGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTA  >  USA300TCH1516_ALE/1058012‑1058192

tgctaaaatcatcaaaggctactatgataaaattggcgaagtcggcaaatacttcgacatcccacaatataaataagcaacatgaacatag                                                                                            >  1:2441931‑M1/91‑91 (MQ=255)

 gctaaaatcatcaaaggctactatgataaaattggcgaagtcggcaaatacttcgacatcccacaatataaataagcaacatgaacatagg                                                                                           >  1:1763557‑M1/90‑91 (MQ=255)

  aTCATGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGa                                                                                          >  1:3426508/1‑91 (MQ=255)

   tCATGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGAt                                                                                         >  1:1335380/1‑91 (MQ=255)

    aaaatcatcaaaggctactatgataaaattggcgaagtcggcaaatacttcgacatcccacaatataaataagcaacatgaacataGGATc                                                                                        <  1:1070758‑M1/5‑1 (MQ=255)

    aaaatcatcaaaggctactatgataaaattggcgaagtcggcaaatacttcgacatcccacaatataaataagcaacatgaacataGGATc                                                                                        <  1:2439381‑M1/5‑1 (MQ=255)

    aaaatcatcaaaggctactatgataaaattggcgaagtcggcaaatacttcgacatcccacaatataaataagcaacatgaacataGGATc                                                                                        <  1:2336153‑M1/5‑1 (MQ=255)

    aaaatcatcaaaggctactatgataaaattggcgaagtcggcaaatacttcgacatcccacaatataaataagcaacatgaacataGGATc                                                                                        <  1:1751029‑M1/5‑1 (MQ=255)

     aTGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCa                                                                                       <  1:407107/91‑1 (MQ=255)

      tGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCaa                                                                                      <  1:330042/91‑1 (MQ=255)

       gAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCaaa                                                                                     <  1:1836744/91‑1 (MQ=255)

       gAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCaaa                                                                                     <  1:1481743/91‑1 (MQ=255)

       atcatcaaaggctactatgataaaattggcgaagtcggcaaatacttcgacatcccacaatataaataagcaacatgaacataGGATCaaa                                                                                     <  1:1341050‑M1/8‑1 (MQ=255)

        aaTTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAg                                                                                    <  1:3782423/91‑1 (MQ=255)

         aTTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAgg                                                                                   <  1:2114654/91‑1 (MQ=255)

          ttACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGt                                                                                  <  1:2207946/91‑1 (MQ=255)

          ttACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGt                                                                                  <  1:2766727/91‑1 (MQ=255)

          ttACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGt                                                                                  <  1:4119035/91‑1 (MQ=255)

          ttACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGt                                                                                  <  1:4119306/91‑1 (MQ=255)

            aCAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCa                                                                                >  1:1431485/1‑91 (MQ=255)

               aGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATcc                                                                             >  1:1463823/1‑91 (MQ=255)

               aGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATcc                                                                             >  1:630774/1‑91 (MQ=255)

                   aaaGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCa                                                                         <  1:557715/91‑1 (MQ=255)

                    aaGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATCTATAAAAAAGGGATCAAAGGTCATCCCCCAt                                                                        <  1:3063953/91‑1 (MQ=255)

                       tAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgat                                                                     <  1:3889278/91‑1 (MQ=255)

                       tAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgat                                                                     <  1:3889250/91‑1 (MQ=255)

                         gCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgattg                                                                   <  1:1928430/91‑1 (MQ=255)

                         gCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgattg                                                                   >  1:845404/1‑91 (MQ=255)

                         gCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgattg                                                                   >  1:1724877/1‑91 (MQ=255)

                         gCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgattg                                                                   >  1:1725052/1‑91 (MQ=255)

                         gCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgattg                                                                   >  1:1725117/1‑91 (MQ=255)

                          cGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgattga                                                                  <  1:496854/91‑1 (MQ=255)

                          cGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgattga                                                                  <  1:911297/91‑1 (MQ=255)

                           ggTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCAtgattgat                                                                 <  1:3600784/91‑1 (MQ=255)

                                ttGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTgg                                                            <  1:3636410/91‑1 (MQ=255)

                                  gTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTgggg                                                          <  1:363267/91‑1 (MQ=255)

                                  gTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTgggg                                                          <  1:2436518/91‑1 (MQ=255)

                                   ttAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTggggg                                                         >  1:2485226/1‑91 (MQ=255)

                                    tAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGa                                                        <  1:1040755/91‑1 (MQ=255)

                                    tAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGa                                                        >  1:2940006/1‑91 (MQ=255)

                                     aaaaTTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGAt                                                       >  1:3408487/1‑91 (MQ=255)

                                     aaaaTTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGAt                                                       <  1:886504/91‑1 (MQ=255)

                                     aaaaTTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGAt                                                       <  1:509469/91‑1 (MQ=255)

                                      aaaTTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATg                                                      >  1:1665634/1‑91 (MQ=255)

                                      aaaTTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATg                                                      <  1:598666/91‑1 (MQ=255)

                                       agtcggcaaatacttcgacatcccacaatataaataagcaacatgaacataGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGa                                                     >  1:454664‑M1/52‑91 (MQ=255)

                                       agtcggcaaatacttcgacatcccacaatataaataagcaacatgaacataGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGa                                                     >  1:751290‑M1/52‑91 (MQ=255)

                                       aatggATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGa                                                     <  1:3340485/87‑1 (MQ=255)

                                       aaTTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGa                                                     <  1:3167761/91‑1 (MQ=255)

                                        aTTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATCGTGGGGGATGAc                                                    <  1:3174477/91‑1 (MQ=255)

                                         ttGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACt                                                   <  1:1858948/91‑1 (MQ=255)

                                           ggcaaatacttcgacatcccacaatataaataagcaacatgaacataGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACttt                                                 >  1:220000‑M1/48‑91 (MQ=255)

                                           gATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACttt                                                 >  1:2295739/1‑91 (MQ=255)

                                           gATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACttt                                                 >  1:2295887/1‑91 (MQ=255)

                                           gATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACttt                                                 <  1:2922569/91‑1 (MQ=255)

                                           gATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACttt                                                 >  1:2811527/1‑91 (MQ=255)

                                             tGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTg                                               <  1:2300421/91‑1 (MQ=255)

                                             tGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTg                                               >  1:2456294/1‑91 (MQ=255)

                                             tGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTg                                               <  1:2300483/91‑1 (MQ=255)

                                              ggTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGCCTTTTGa                                              >  1:2064886/1‑91 (MQ=255)

                                                tAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATc                                            <  1:709222/91‑1 (MQ=14)

                                                tAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAAGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATc                                            <  1:709369/91‑1 (MQ=14)

                                                 aaaCAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATcc                                           <  1:2461739/91‑1 (MQ=255)

                                                 aaaCAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATcc                                           <  1:2660298/91‑1 (MQ=255)

                                                 aaaCAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATcc                                           <  1:2660443/91‑1 (MQ=255)

                                                   aCAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCACTATCAATCATGGGGGATGACCTTTGATccct                                         <  1:1010747/91‑3 (MQ=14)

                                                     aaTCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATg                                       <  1:1745000/91‑1 (MQ=255)

                                                     aaTCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATg                                       >  1:2861125/1‑91 (MQ=255)

                                                      aTCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGt                                      <  1:565028/91‑1 (MQ=255)

                                                       tCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGtt                                     <  1:2997432/91‑1 (MQ=255)

                                                       tCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGtt                                     <  1:3856784/91‑1 (MQ=255)

                                                       tCACCGCTATTTTTGCTTGTGTATGCATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGtt                                     <  1:3856885/91‑1 (MQ=255)

                                                        cACCGCTATTTTTGCTTGTGTATGTCTAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTc                                    <  1:3855036/91‑1 (MQ=255)

                                                        cACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTc                                    >  1:867741/1‑91 (MQ=255)

                                                         aCCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCa                                   <  1:3409090/91‑1 (MQ=255)

                                                         aCCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCa                                   <  1:3409266/91‑1 (MQ=255)

                                                          ccGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCAt                                  >  1:3249100/1‑91 (MQ=255)

                                                          ccGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCAt                                  >  1:691515/1‑91 (MQ=255)

                                                          ccGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCAt                                  <  1:4035501/91‑1 (MQ=255)

                                                           cGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATg                                 >  1:3001622/1‑91 (MQ=255)

                                                              tATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTg                              <  1:1689330/91‑1 (MQ=255)

                                                               aTTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGc                             >  1:246081/1‑91 (MQ=255)

                                                               aTTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGc                             >  1:2681844/1‑91 (MQ=255)

                                                                tttttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCt                            >  1:702377/1‑91 (MQ=255)

                                                                 ttttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCtt                           <  1:3438105/91‑1 (MQ=255)

                                                                  tttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCtta                          >  1:1879369/1‑91 (MQ=255)

                                                                  tttGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCtta                          >  1:2228729/1‑91 (MQ=255)

                                                                    tGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttatt                        <  1:3084627/91‑1 (MQ=255)

                                                                    tGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttatt                        >  1:3388985/1‑91 (MQ=255)

                                                                     taaataagcaacatgaacataGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTT‑GATCCTATGTTCATGTTGCttattta                      >  1:299129‑M1/22‑91 (MQ=255)

                                                                     gCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGAttattt                       <  1:3257741/91‑1 (MQ=255)

                                                                      cTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttattta                      >  1:897328/1‑91 (MQ=255)

                                                                      cTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCttattta                      >  1:2414701/1‑91 (MQ=255)

                                                                              tgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTgg              <  1:3240729/91‑1 (MQ=255)

                                                                              tgtatAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTgg              >  1:2422235/1‑91 (MQ=255)

                                                                                tataAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGa            >  1:3378250/1‑91 (MQ=255)

                                                                                tataAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGa            >  1:3378703/1‑91 (MQ=255)

                                                                                      aaaGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGa      <  1:3139252/91‑1 (MQ=255)

                                                                                         gggATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGt   >  1:2749298/1‑91 (MQ=255)

                                                                                          GGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTa  <  1:434039‑M1/91‑1 (MQ=255)

GAATCATGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGACTTTTGATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTA  >  USA300TCH1516_ALE/1058012‑1058192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.