| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1084763 | 82 (0.830) | 15 (0.170) | 10/140 | NT | 16.3% | intergenic (+135/+130) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC |
| ? | USA300TCH1516_ALE | = 1084806 | 82 (0.950) | intergenic (+178/+87) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC | |||||
TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1084666‑1084763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaagaggTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT < USA300TCH1516_ALE/1084806‑1084718 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA < 1:3695819/91‑1 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA < 1:1340335/91‑1 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA < 1:2577652/91‑1 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG > 1:3026715/1‑91 CGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGA > 1:1523842/1‑91 ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG > 1:1400306/1‑91 GAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAA < 1:3607978/91‑1 AGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAA < 1:2540117/91‑1 CTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCAC‑AACATGTTATTTTGTTCATCCAAACATG < 1:1864078/91‑1 AGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGT < 1:2698640/91‑1 GGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTT < 1:2995318/91‑1 GGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTT < 1:2995206/91‑1 GACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTG < 1:2497468/91‑1 CATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTG < 1:1002011/91‑1 TTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGC < 1:2912064/91‑1 GATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGC < 1:1279816/91‑1 GATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGC < 1:412809/91‑1 GATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGC < 1:412864/91‑1 GATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGC < 1:413019/91‑1 GATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGC < 1:2295661/91‑1 CAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTAT < 1:3956718/91‑1 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA > 1:2389721/1‑91 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA > 1:1141243/1‑91 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA < 1:2189130/91‑1 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA < 1:3654578/91‑1 AAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTAC < 1:1519478/91‑1 AAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTAC < 1:1519274/91‑1 AAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAATATGTTGTGGCGCCCCTTTTGTATTACAAATGCATAATCACAAATTTGATACAG > 1:3860357/1‑91 AAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTTCAG > 1:1078322/1‑91 AAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAG < 1:2579088/91‑1 AGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGA > 1:464190/1‑91 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA > 1:3194853/1‑91 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA < 1:1024484/91‑1 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT > 1:2941021/1‑91 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1084666‑1084763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaagaggTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT < USA300TCH1516_ALE/1084806‑1084718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |