New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 108476382 (0.830)15 (0.170) 10/140 NT 16.3% intergenic (+135/+130) purD/ykoC_1 Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC
?USA300TCH1516_ALE = 1084806 82 (0.950)intergenic (+178/+87) purD/ykoC_1 Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC

Only 100 of 145 total aligned reads displayed.

ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAT  >  USA300TCH1516_ALE/1084673‑1084853
                                                                                          |                                                                                          
aTAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG                                                                                            >  1:1400306‑M1/1‑91 (MQ=255)
   gATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGgcgc                                                                                         >  1:1141723/1‑91 (MQ=255)
   aaatttttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGgcgc                                                                                         >  1:1973092/4‑91 (MQ=255)
       ttttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCcaca                                                                                     >  1:3018118/1‑91 (MQ=255)
       ttttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCcaca                                                                                     >  1:1290739/1‑91 (MQ=255)
         ttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaac                                                                                   <  1:2241066/91‑1 (MQ=255)
          tCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaaca                                                                                  <  1:3638873/91‑1 (MQ=255)
           cATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACAt                                                                                 <  1:3896742/91‑1 (MQ=255)
             tAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGt                                                                               >  1:36835/1‑91 (MQ=255)
              aGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGtt                                                                              >  1:1633597/1‑91 (MQ=255)
               gCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGttt                                                                             >  1:854456/1‑91 (MQ=255)
               gCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGttt                                                                             >  1:3171718/1‑91 (MQ=255)
                cTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTg                                                                            <  1:4007500/91‑1 (MQ=255)
                  tttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGa                                                                          >  1:1386957/1‑91 (MQ=255)
                   ttttAGTTGTAGCGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGAt                                                                         >  1:3172542/1‑91 (MQ=255)
                     ttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGa                                                                       <  1:1333229/91‑1 (MQ=255)
                     ttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGa                                                                       <  1:1333291/91‑1 (MQ=255)
                     ttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGa                                                                       >  1:2849653/1‑91 (MQ=255)
                      tAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGaa                                                                      <  1:575103/91‑1 (MQ=255)
                          tGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaa                                                                  >  1:3107391/1‑91 (MQ=255)
                          tGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaa                                                                  >  1:3106900/1‑91 (MQ=255)
                          tGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaa                                                                  >  1:565898/1‑91 (MQ=255)
                           gTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaaa                                                                 >  1:2722725/1‑91 (MQ=255)
                            tAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAAt                                                                <  1:2529011/91‑1 (MQ=255)
                             agagTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATa                                                               <  1:1250796/91‑1 (MQ=255)
                              gagTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaa                                                              <  1:3607978‑M1/91‑31 (MQ=255)
                               agTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAAc                                                             <  1:330090/91‑1 (MQ=255)
                                gTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACa                                                            <  1:272006/91‑1 (MQ=255)
                                     ggACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgtt                                                       <  1:2995206‑M1/91‑38 (MQ=255)
                                      gACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttg                                                      <  1:2497468‑M1/91‑39 (MQ=255)
                                        cATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtg                                                    <  1:1002011‑M1/91‑41 (MQ=255)
                                          ttGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggc                                                  <  1:2912064‑M1/91‑43 (MQ=255)
                                          ttGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGc                                                  >  1:2664345/1‑91 (MQ=255)
                                          ttGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGc                                                  <  1:444385/91‑1 (MQ=255)
                                            gATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgc                                                <  1:413019‑M1/91‑45 (MQ=255)
                                            gATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgc                                                <  1:412864‑M1/91‑45 (MQ=255)
                                              tttCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcct                                              >  1:3194853‑M2/1‑88 (MQ=255)
                                              tttCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcct                                              <  1:1024484‑M2/91‑4 (MQ=255)
                                                tCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctct                                            >  1:464190‑M2/1‑86 (MQ=255)
                                                 cTGTATCAAATTTGTGATTATGCATTTGTAATACAAAAGGGGCGCCACAACATATTTGGATGAACAAAATAACATGTTTGTGGCAcctctt                                           >  1:3860357‑M2/1‑85 (MQ=255)
                                                 cTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctt                                           <  1:2579088‑M2/91‑7 (MQ=255)
                                                 cTGAACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctt                                           >  1:1078322‑M2/1‑85 (MQ=255)
                                                   gTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctttt                                         <  1:1519274‑M2/91‑9 (MQ=255)
                                                   gTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctttt                                         <  1:1519478‑M2/91‑9 (MQ=255)
                                                    tACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttg                                        >  1:1141243‑M2/1‑82 (MQ=255)
                                                    tACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttg                                        >  1:2389721‑M2/1‑82 (MQ=255)
                                                      ccAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGtt                                      >  1:243587/1‑91 (MQ=255)
                                                      ccAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGtt                                      >  1:1749562/1‑91 (MQ=255)
                                                       cAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGttt                                     <  1:4114525/91‑1 (MQ=255)
                                                         aaTTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAg                                   >  1:2708964/1‑91 (MQ=255)
                                                          aTTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGt                                  <  1:3065058/91‑1 (MQ=255)
                                                             tgtgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg                               <  1:1791722/91‑1 (MQ=255)
                                                             tgtgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg                               >  1:1284442/1‑91 (MQ=255)
                                                               tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa                             <  1:2419369/91‑1 (MQ=255)
                                                               tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa                             <  1:2419649/91‑1 (MQ=255)
                                                                gATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGaa                            >  1:299125/1‑91 (MQ=255)
                                                                   tATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGATCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATaa                         <  1:1249868/91‑1 (MQ=255)
                                                                   tATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCCCTTTTGTTTAGTATGGAATaa                         >  1:80981/1‑91 (MQ=255)
                                                                      gCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATg                      <  1:676464/91‑1 (MQ=255)
                                                                        atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                    >  1:2010488/1‑91 (MQ=255)
                                                                         tatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt                   <  1:3306058/91‑1 (MQ=255)
                                                                         tatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt                   >  1:1436167/1‑91 (MQ=255)
                                                                         tatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt                   >  1:1436135/1‑91 (MQ=255)
                                                                         tatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt                   <  1:1642867/91‑1 (MQ=255)
                                                                          atGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttt                  >  1:2008129/1‑91 (MQ=255)
                                                                           tGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtttt                 <  1:1825383/91‑1 (MQ=255)
                                                                           tGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtttt                 >  1:3796838/1‑91 (MQ=255)
                                                                             tAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttct               <  1:2361853/91‑1 (MQ=255)
                                                                               aTACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCGcctcttttgtattacatatgcataatcacaaatttg             <  1:3956718‑M2/91‑37 (MQ=255)
                                                                               aTACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttcttt             >  1:1962979/1‑91 (MQ=255)
                                                                                tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt            <  1:3086045/91‑1 (MQ=255)
                                                                                 aCAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttcttttt           <  1:2782111/91‑1 (MQ=255)
                                                                                 aCAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttcttttt           <  1:2112248/91‑1 (MQ=255)
                                                                                 aCAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttcttttt           >  1:4067820/1‑91 (MQ=255)
                                                                                  cAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggta          <  1:3654578‑M1/91‑83 (MQ=255)
                                                                                  cAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggta          >  1:2389721‑M1/1‑9 (MQ=255)
                                                                                  cAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggta          <  1:2189130‑M1/91‑83 (MQ=255)
                                                                                   aaaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtac         <  1:1519274‑M1/91‑84 (MQ=255)
                                                                                    aaaGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCta        >  1:3154353/1‑91 (MQ=255)
                                                                                    aaaGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCta        >  1:562818/1‑91 (MQ=255)
                                                                                    aaaGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCta        >  1:2567771/1‑91 (MQ=255)
                                                                                    aaaGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCta        >  1:2567647/1‑91 (MQ=255)
                                                                                     aaGAGGtgccacaaacatgttattttgttcatccaaatatgttgtggcgccccttttgtattacaaatgcataatcacaaatttgatacag       >  1:3860357‑M1/1‑6 (MQ=255)
                                                                                     aaGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCATCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtat       <  1:3596321/91‑1 (MQ=255)
                                                                                     aaGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtat       >  1:1905694/1‑91 (MQ=255)
                                                                                      agagGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtata      >  1:3677863/1‑91 (MQ=255)
                                                                                      agagGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtata      <  1:2292610/91‑1 (MQ=255)
                                                                                       gagGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATAc     <  1:1090028/91‑1 (MQ=255)
                                                                                        agGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaa    >  1:3194853‑M1/1‑3 (MQ=255)
                                                                                        agGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaa    <  1:1024484‑M1/91‑89 (MQ=255)
                                                                                        agGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACa    >  1:352236/1‑91 (MQ=255)
                                                                                        agGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACa    <  1:782057/91‑1 (MQ=255)
                                                                                         ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat   >  1:2941021‑M1/1‑2 (MQ=255)
                                                                                         ggCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACaa   <  1:3790621/91‑1 (MQ=255)
                                                                                         ggCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACaa   >  1:1859753/1‑91 (MQ=255)
                                                                                          gcgcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgtattacatatgcataatcacaaatttggtacagaaatc  <  1:412809‑M2/91‑48 (MQ=255)
                                                                                          gcgcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgtattacatatgcataatcacaaatttggtacagaaatc  <  1:1279816‑M2/91‑48 (MQ=255)
                                                                                          gcgcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgtattacatatgcataatcacaaatttggtacagaaatc  <  1:413019‑M2/91‑48 (MQ=255)
                                                                                          gcgcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgtattacatatgcataatcacaaatttggtacagaaatc  <  1:2295661‑M2/91‑48 (MQ=255)
                                                                                          gcgcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAt  >  1:3140484/1‑91 (MQ=255)
                                                                                          |                                                                                          
ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAT  >  USA300TCH1516_ALE/1084673‑1084853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.