| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1086962 = | 81 (0.820) | 5 (0.060) | 5/140 | NT | 7.1% | coding (131/1401 nt) | ykoD_1 | Putative HMP/thiamine import ATP‑binding protein YkoD |
| ? | USA300TCH1516_ALE | 1087000 = | 59 (0.690) | coding (93/1401 nt) | ykoD_1 | Putative HMP/thiamine import ATP‑binding protein YkoD | |||||
ATCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1087061‑1086962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAA > USA300TCH1516_ALE/1087000‑1087089 ATCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGG > 1:1530634/1‑91 TCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGT > 1:3354174/1‑91 TCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGT > 1:4070581/1‑91 CAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAA > 1:1727324/1‑91 CAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAA > 1:4125044/1‑91 CAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAA > 1:3928139/1‑91 AGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAA > 1:4099568/1‑91 TGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGT < 1:355242/91‑1 GGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTA < 1:1569429/91‑1 GGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTA > 1:1917802/1‑91 GTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC < 1:903420/91‑1 GTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC < 1:112165/91‑1 ATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATT > 1:3545968/1‑91 GTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAC > 1:2827238/1‑91 TACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACC > 1:2398043/1‑91 ACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCA > 1:3125484/1‑91 CTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGAT > 1:2944464/1‑91 GTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACT > 1:2034523/1‑91 TAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTT < 1:3931321/91‑1 GTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTT < 1:2144438/91‑1 TACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTT < 1:2605421/91‑1 ACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTA > 1:3530098/1‑91 ACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTA > 1:10284/1‑91 CTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAA < 1:1033903/91‑1 ATCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1087061‑1086962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAA > USA300TCH1516_ALE/1087000‑1087089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |