BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1086962 =	81 (0.820)	5 (0.060)	5/140	NT	7.1%	coding (131/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD
*	?	USA300TCH1516_ALE	1087000 =	59 (0.690)	5 (0.060)	5/140	NT	7.1%	coding (93/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD

Only 100 of 109 total aligned reads displayed.

ACGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAC  >  USA300TCH1516_ALE/1086872‑1087052

ttaaaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaag                                                                                            <  1:1033903‑M1/1‑1 (MQ=255)

aCGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAgtg                                                                                            >  1:1006616/1‑91 (MQ=255)

aCGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAgtg                                                                                            >  1:3834754/1‑91 (MQ=255)

 taaaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGt                                                                                           >  1:10284‑M1/90‑91 (MQ=255)

 taaaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGt                                                                                           >  1:3530098‑M1/90‑91 (MQ=255)

 cGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACCTTCAGAAgtgt                                                                                           >  1:3903029/1‑91 (MQ=255)

 cGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAgtgt                                                                                           <  1:1623634/91‑1 (MQ=255)

  gCCACTTAATGGGTCAACGATTAGTTCATCATACTTCGTAGGTAATCCAATTAAATTAGTAACAATACCACTTAATACATTCAGAAGTGTa                                                                                          >  1:3313529/1‑91 (MQ=255)

  aaaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTa                                                                                          <  1:2605421‑M1/3‑1 (MQ=255)

   ccACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTAc                                                                                         >  1:1838758/1‑91 (MQ=255)

   aaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTAc                                                                                         <  1:2144438‑M1/4‑1 (MQ=255)

     aCTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACtt                                                                                       >  1:1651408/1‑91 (MQ=255)

     aCTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACtt                                                                                       >  1:2439651/1‑91 (MQ=255)

      cTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACttt                                                                                      <  1:2096135/91‑1 (MQ=255)

      cTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACttt                                                                                      <  1:2095984/91‑1 (MQ=255)

      cTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACttt                                                                                      <  1:1930133/91‑1 (MQ=255)

      cTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACttt                                                                                      <  1:3745662/91‑1 (MQ=255)

        aagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTa                                                                                    <  1:3931321‑M1/9‑1 (MQ=255)

         agtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTAc                                                                                   >  1:2034523‑M1/82‑91 (MQ=255)

           tGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCg                                                                                 <  1:2443177/91‑1 (MQ=255)

           tGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCg                                                                                 >  1:4005316/1‑91 (MQ=255)

           tGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCg                                                                                 <  1:1449047/91‑1 (MQ=255)

           tGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCg                                                                                 >  1:4005296/1‑91 (MQ=255)

                cAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAAcc                                                                            <  1:324441/91‑1 (MQ=255)

                   cGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGa                                                                         <  1:1746985/91‑1 (MQ=255)

                      ttAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAgg                                                                      <  1:719512/91‑1 (MQ=255)

                      ttAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAgg                                                                      <  1:3123381/91‑1 (MQ=255)

                        aGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGAc                                                                    <  1:902323/91‑1 (MQ=255)

                        aGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGAc                                                                    <  1:901971/91‑1 (MQ=255)

                        aGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGAc                                                                    >  1:1914136/1‑91 (MQ=255)

                        aGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGAc                                                                    >  1:1494338/1‑91 (MQ=255)

                          ttCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCg                                                                  >  1:1033453/1‑91 (MQ=255)

                          ttCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCg                                                                  >  1:2195052/1‑91 (MQ=255)

                           tcatcaTATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGa                                                                 >  1:3098009/1‑91 (MQ=255)

                            catcatATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAg                                                                <  1:3038017/91‑1 (MQ=255)

                            atccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAg                                                                >  1:2944464‑M1/63‑91 (MQ=255)

                             atcatATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGt                                                               >  1:3706821/1‑91 (MQ=255)

                                  atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAg                                                          >  1:1901945/1‑91 (MQ=255)

                                  atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAg                                                          <  1:3602878/91‑1 (MQ=255)

                                  atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAg                                                          <  1:117700/91‑1 (MQ=255)

                                  atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAg                                                          >  1:1901815/1‑91 (MQ=255)

                                    ggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTa                                                        >  1:2398043‑M1/55‑91 (MQ=255)

                                     tCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTAc                                                       >  1:3910552/1‑91 (MQ=255)

                                     tCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTAc                                                       <  1:658835/91‑1 (MQ=255)

                                     gtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTAc                                                       >  1:2827238‑M1/54‑91 (MQ=255)

                                      cATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACt                                                      >  1:2559471/1‑91 (MQ=255)

                                      cATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACt                                                      >  1:2559558/1‑91 (MQ=255)

                                         aGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtttt                                                   >  1:103044/1‑91 (MQ=255)

                                          ggTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttttt                                                  <  1:3938564/91‑1 (MQ=255)

                                          ggTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttttt                                                  <  1:2122730/91‑1 (MQ=255)

                                           gTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTc                                                 >  1:461086/1‑91 (MQ=255)

                                             aaTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCtt                                               >  1:235527/1‑91 (MQ=255)

                                              aTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCttt                                              >  1:2776227/1‑91 (MQ=255)

                                              aTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCttt                                              >  1:2776280/1‑91 (MQ=255)

                                              aTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCttt                                              <  1:1928444/91‑1 (MQ=255)

                                              aTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCttt                                              >  1:2940786/1‑91 (MQ=255)

                                               ttCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTg                                             <  1:1050163/91‑1 (MQ=255)

                                               ttCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTg                                             <  1:157621/91‑1 (MQ=255)

                                                tCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGt                                            >  1:2318683/1‑91 (MQ=255)

                                                tCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGt                                            >  1:716217/1‑91 (MQ=255)

                                                tCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGt                                            >  1:3445738/1‑91 (MQ=255)

                                                  aattaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCt                                          >  1:1310210/1‑91 (MQ=255)

                                                   attaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCtt                                         <  1:3094596/91‑1 (MQ=255)

                                                    ttaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTg                                        <  1:328781/91‑1 (MQ=255)

                                                    ttaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTg                                        <  1:328932/91‑1 (MQ=255)

                                                      aaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGaa                                      <  1:2105485/91‑1 (MQ=255)

                                                        attaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATa                                    <  1:1477680/91‑1 (MQ=255)

                                                        attaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATa                                    <  1:660359/91‑1 (MQ=255)

                                                         ttaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTCTTCTTTGTCTTGAATAg                                   >  1:2255344/1‑91 (MQ=255)

                                                               aatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                             >  1:3545968‑M1/28‑91 (MQ=255)

                                                               aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                             <  1:2272766/91‑1 (MQ=255)

                                                                cAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATAtt                            <  1:3271325/91‑1 (MQ=255)

                                                                  aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCCACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTa                          >  1:1531971/1‑91 (MQ=255)

                                                                  aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTa                          >  1:1843830/1‑91 (MQ=255)

                                                                  aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTa                          >  1:1749911/1‑91 (MQ=255)

                                                                  aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTa                          >  1:1846292/1‑91 (MQ=255)

                                                                    aCCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTaaa                        >  1:2591657/1‑91 (MQ=255)

                                                                     ccACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAAt                       >  1:1434153/1‑91 (MQ=255)

                                                                     ccACTTAACACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAAt                       >  1:1434301/1‑91 (MQ=255)

                                                                      cACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATg                      <  1:2700615/91‑1 (MQ=255)

                                                                      cACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATg                      <  1:2700313/91‑1 (MQ=255)

                                                                      cACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATg                      <  1:1879553/91‑1 (MQ=255)

                                                                        cTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGAt                    <  1:668027/91‑1 (MQ=255)

                                                                        cTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGAt                    <  1:2615143/91‑1 (MQ=255)

                                                                          tAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCg                  <  1:2637578/91‑1 (MQ=255)

                                                                               cATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAt             >  1:3264876/1‑91 (MQ=255)

                                                                               cATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAt             >  1:1438818/1‑91 (MQ=255)

                                                                               cATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAt             >  1:1439910/1‑91 (MQ=255)

                                                                                 ttCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAttt           <  1:2932212/91‑1 (MQ=255)

                                                                                 ttCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAttt           <  1:2936772/91‑1 (MQ=255)

                                                                                     gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg       >  1:548377/1‑91 (MQ=255)

                                                                                     gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg       >  1:548510/1‑91 (MQ=255)

                                                                                     gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg       >  1:105812/1‑91 (MQ=255)

                                                                                     gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg       >  1:960943/1‑91 (MQ=255)

                                                                                     gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCCTGAATAGTGATATTTAAATGATCGAAAATTTTACg       >  1:105971/1‑91 (MQ=255)

                                                                                      aaGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGt      <  1:1178627/91‑1 (MQ=255)

                                                                                        gtgtACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTg    >  1:3872451/1‑91 (MQ=255)

                                                                                         tgtACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGa   >  1:3541524/1‑91 (MQ=255)

                                                                                          GTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAc  <  1:112165‑M1/91‑1 (MQ=255)

                                                                                          GTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAc  <  1:903420‑M1/91‑1 (MQ=255)

ACGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAC  >  USA300TCH1516_ALE/1086872‑1087052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.