New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1086962 =	81 (0.820)	5 (0.060)	5/140	NT	7.1%	coding (131/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD
	?	USA300TCH1516_ALE	1087000 =	59 (0.690)					coding (93/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD

CATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAA  >  USA300TCH1516_ALE/1086910‑1087089                                                                                           |                                                                                          cATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACt                                                                                           >  1:2559558/1‑91 (MQ=255) cATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACt                                                                                           >  1:2559471/1‑91 (MQ=255)  aTAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtt                                                                                          >  1:2723667/1‑91 (MQ=255)    aGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtttt                                                                                        >  1:103044/1‑91 (MQ=255)     ggTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttttt                                                                                       <  1:2122730/91‑1 (MQ=255)     ggTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttttt                                                                                       <  1:3938564/91‑1 (MQ=255)      gTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTc                                                                                      >  1:461086/1‑91 (MQ=255)        aaTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCtt                                                                                    >  1:235527/1‑91 (MQ=255)         aTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCttt                                                                                   <  1:1928444/91‑1 (MQ=255)         aTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCttt                                                                                   >  1:2940786/1‑91 (MQ=255)         aTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCttt                                                                                   >  1:2776227/1‑91 (MQ=255)         aTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCttt                                                                                   >  1:2776280/1‑91 (MQ=255)          ttCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTg                                                                                  <  1:1050163/91‑1 (MQ=255)          ttCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTg                                                                                  <  1:157621/91‑1 (MQ=255)           tCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGt                                                                                 >  1:716217/1‑91 (MQ=255)           tCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGt                                                                                 >  1:2318683/1‑91 (MQ=255)           tCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGt                                                                                 >  1:3445738/1‑91 (MQ=255)             aattaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCt                                                                               >  1:1310210/1‑91 (MQ=255)              attaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCtt                                                                              <  1:3094596/91‑1 (MQ=255)               ttaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTg                                                                             <  1:328932/91‑1 (MQ=255)               ttaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTg                                                                             <  1:328781/91‑1 (MQ=255)                 aaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGaa                                                                           <  1:2105485/91‑1 (MQ=255)                   attaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATa                                                                         <  1:1477680/91‑1 (MQ=255)                   attaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATa                                                                         <  1:660359/91‑1 (MQ=255)                    ttaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTCTTCTTTGTCTTGAATAg                                                                        >  1:2255344/1‑91 (MQ=255)                       ggAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAgcga                                                                     >  1:473284/1‑88 (MQ=255)                          aatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                                                                  >  1:3545968‑M1/28‑91 (MQ=255)                          aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                                                                  <  1:2272766/91‑1 (MQ=255)                           cAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATAtt                                                                 <  1:3271325/91‑1 (MQ=255)                           atatcactattcaagacaaagaaaaagtacttttactcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATAtt                                                                 >  1:3545968‑M2/65‑91 (MQ=255)                             aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCCACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTa                                                               >  1:1531971/1‑91 (MQ=255)                             aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTa                                                               >  1:1749911/1‑91 (MQ=255)                             aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTa                                                               >  1:1846292/1‑91 (MQ=255)                             aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTa                                                               >  1:1843830/1‑91 (MQ=255)                               aCCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTaaa                                                             >  1:2591657/1‑91 (MQ=255)                                ccACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAAt                                                            >  1:1434153/1‑91 (MQ=255)                                ccACTTAACACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAAt                                                            >  1:1434301/1‑91 (MQ=255)                                 cACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATg                                                           <  1:1879553/91‑1 (MQ=255)                                 cACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATg                                                           <  1:2700615/91‑1 (MQ=255)                                 cACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATg                                                           <  1:2700313/91‑1 (MQ=255)                                   cTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGAt                                                         <  1:668027/91‑1 (MQ=255)                                   cTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGAt                                                         <  1:2615143/91‑1 (MQ=255)                                     tAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCg                                                       <  1:2637578/91‑1 (MQ=255)                                          cATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAt                                                  >  1:1439910/1‑91 (MQ=255)                                          cATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAt                                                  >  1:1438818/1‑91 (MQ=255)                                          cATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAt                                                  >  1:3264876/1‑91 (MQ=255)                                            ttCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAttt                                                <  1:2936772/91‑1 (MQ=255)                                            ttCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAttt                                                <  1:2932212/91‑1 (MQ=255)                                            ttCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAttt                                                <  1:3617766/91‑1 (MQ=255)                                                gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg                                            >  1:960943/1‑91 (MQ=255)                                                gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg                                            >  1:548377/1‑91 (MQ=255)                                                gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg                                            >  1:548510/1‑91 (MQ=255)                                                gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg                                            >  1:105812/1‑91 (MQ=255)                                                gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCCTGAATAGTGATATTTAAATGATCGAAAATTTTACg                                            >  1:105971/1‑91 (MQ=255)                                                 aaGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGt                                           <  1:1178627/91‑1 (MQ=255)                                                   gtgtACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTg                                         >  1:3872451/1‑91 (MQ=255)                                                    tgtACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGa                                        >  1:3541524/1‑91 (MQ=255)                                                     gtacttttactcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAc                                       >  1:2827238‑M2/39‑91 (MQ=255)                                                     GTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAc                                       <  1:112165‑M1/91‑1 (MQ=255)                                                     GTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAc                                       <  1:903420‑M1/91‑1 (MQ=255)                                                      tacttttactcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAcc                                      >  1:2398043‑M2/38‑91 (MQ=255)                                                      TACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAcc                                      >  1:1917802‑M1/1‑91 (MQ=255)                                                      TACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAcc                                      <  1:1569429‑M1/91‑1 (MQ=255)                                                       acttttactcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCa                                     >  1:3125484‑M2/37‑91 (MQ=255)                                                       ACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCa                                     <  1:355242‑M1/91‑1 (MQ=255)                                                         TTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACt                                   >  1:4099568‑M1/1‑91 (MQ=255)                                                           TTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTg                                 >  1:3928139‑M1/1‑91 (MQ=255)                                                           TTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTg                                 >  1:1727324‑M1/1‑91 (MQ=255)                                                           TTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTg                                 >  1:4125044‑M1/1‑91 (MQ=255)                                                             ACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGa                               >  1:4070581‑M1/1‑91 (MQ=255)                                                             ACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGa                               >  1:3354174‑M1/1‑91 (MQ=255)                                                              ctcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGat                              >  1:2944464‑M2/30‑91 (MQ=255)                                                              CCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGAt                              >  1:1530634‑M1/1‑91 (MQ=255)                                                               cGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGata                             >  1:2317122/1‑91 (MQ=255)                                                                  aaCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATAttt                          >  1:1767532/1‑91 (MQ=255)                                                                  aaCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATAttt                          <  1:2985625/91‑1 (MQ=255)                                                                  aaCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATAttt                          >  1:1038585/1‑91 (MQ=255)                                                                  aaCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATAttt                          <  1:2507664/91‑1 (MQ=255)                                                                    ccAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTa                        <  1:53265/91‑1 (MQ=255)                                                                       gAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATc                     >  1:1013690/1‑91 (MQ=255)                                                                       gAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATc                     >  1:1014572/1‑91 (MQ=255)                                                                       gAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATc                     >  1:1012749/1‑91 (MQ=255)                                                                          ggACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTa                  >  1:2309347/1‑91 (MQ=255)                                                                            aCCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTaaa                >  1:2985261/1‑91 (MQ=255)                                                                             ccGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAAt               >  1:3465617/1‑91 (MQ=255)                                                                             ccGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAAt               >  1:138052/1‑91 (MQ=255)                                                                             ccGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAAt               <  1:899953/91‑1 (MQ=255)                                                                              cGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATc              <  1:3212443/91‑1 (MQ=255)                                                                              cGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATc              <  1:3212428/91‑1 (MQ=255)                                                                              cGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATc              <  1:3212369/91‑1 (MQ=255)                                                                               gAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCa             >  1:3298646/1‑91 (MQ=255)                                                                                aGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCac            >  1:1227389/1‑91 (MQ=255)                                                                                aGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCac            >  1:1071974/1‑91 (MQ=255)                                                                                 gtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCact           >  1:2034523‑M2/11‑91 (MQ=255)                                                                                  taaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCactt          <  1:3931321‑M2/82‑1 (MQ=255)                                                                                       gtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACttt     <  1:2144438‑M2/87‑1 (MQ=255)                                                                                        tacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACtttt    <  1:2605421‑M2/88‑1 (MQ=255)                                                                                         acTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTa   >  1:10284‑M2/3‑91 (MQ=255)                                                                                         acTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTa   >  1:3530098‑M2/3‑91 (MQ=255)                                                                                          cTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTaa  <  1:1033903‑M2/90‑1 (MQ=255)                                                                                           |                                                                                          CATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAA  >  USA300TCH1516_ALE/1086910‑1087089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.