| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1098317 | 102 (1.040) | 5 (0.060) | 4/132 | NT | 5.3% | intergenic (+296/+53) | ktrA/rnj1 | Ktr system potassium uptake protein A/Ribonuclease J 1 |
| ? | USA300TCH1516_ALE | = 1098353 | 96 (1.180) | intergenic (+332/+17) | ktrA/rnj1 | Ktr system potassium uptake protein A/Ribonuclease J 1 | |||||
CAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1098214‑1098317‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagctactaacTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAATCAATGTTC < USA300TCH1516_ALE/1098353‑1098266 CAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGA < 1:2949690/91‑1 AGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAA > 1:3462174/1‑91 GCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAG > 1:2051915/1‑91 GCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAG > 1:2603393/1‑91 GCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAG > 1:2051889/1‑91 TTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTAC < 1:1573041/91‑1 TTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTAC < 1:1844764/91‑1 CGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAA < 1:656568/91‑1 CGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAA > 1:1381903/1‑91 CGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAA > 1:2094946/1‑91 CGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAA > 1:638631/1‑91 CGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAA > 1:2576590/1‑91 GTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAACGCTACTAAC > 1:2732835/1‑91 GTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAAC < 1:2096443/91‑1 GTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAAC > 1:1053049/1‑91 GAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTT < 1:3946805/91‑1 ATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTA < 1:2515682/91‑1 TTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAG < 1:4120212/91‑1 ATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTT < 1:2327493/91‑1 ATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACTTTGAAGTGAAGGTTTAATTAAACTCACCACCCATTGTTAGTAGCTT < 1:2327475/91‑1 AGAAAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACA < 1:2336594/91‑1 AAAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATA > 1:1231598/1‑91 AAAAGCTACTAACTTTGAAGTGAAGTTTTAATTCAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAA < 1:3674569/91‑1 AAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAA < 1:3931073/91‑1 AAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAA < 1:2323896/91‑1 AAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAA < 1:1333728/91‑1 AAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAA > 1:1171559/1‑91 AAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAA < 1:2492753/91‑1 AAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAAT > 1:3079583/1‑91 GCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAATCA > 1:834922/1‑91 CTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAATCAA < 1:735543/91‑1 CTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAATCAATGT > 1:2248490/1‑91 CTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAATCAATGT > 1:1501604/1‑91 CTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAATCAATGT > 1:722965/1‑91 AACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAATCAATGTTC < 1:3109457/91‑1 CAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1098214‑1098317‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagctactaacTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATGAGCTTGAGACATAAATCAATGTTC < USA300TCH1516_ALE/1098353‑1098266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |