BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1098317	102 (1.040)	5 (0.060)	4/132	NT	5.3%	intergenic (+296/+53)	ktrA/rnj1	Ktr system potassium uptake protein A/Ribonuclease J 1
*	?	USA300TCH1516_ALE	= 1098353	96 (1.180)	5 (0.060)	4/132	NT	5.3%	intergenic (+332/+17)	ktrA/rnj1	Ktr system potassium uptake protein A/Ribonuclease J 1

Only 100 of 124 total aligned reads displayed.

GAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTGGTTTTCTAGCTGTTT  >  USA300TCH1516_ALE/1098266‑1098443

gAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgtt                                                                                         <  1:3109457‑M2/91‑4 (MQ=255)

  aCATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttag                                                                                       >  1:1501604‑M2/1‑86 (MQ=255)

  aCATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttag                                                                                       >  1:2248490‑M2/1‑86 (MQ=255)

  aCATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttag                                                                                       >  1:722965‑M2/1‑86 (MQ=255)

     ttGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtag                                                                                    <  1:735543‑M2/91‑9 (MQ=255)

      tGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagc                                                                                   >  1:834922‑M2/1‑82 (MQ=255)

        aTTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagctt                                                                                 >  1:3079583‑M2/1‑80 (MQ=255)

         tttATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagcttt                                                                                <  1:2492753‑M2/91‑13 (MQ=255)

          ttATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagctttt                                                                               <  1:2323896‑M2/91‑14 (MQ=255)

          ttATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagctttt                                                                               <  1:1333728‑M2/91‑14 (MQ=255)

          ttATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagctttt                                                                               <  1:3931073‑M2/91‑14 (MQ=255)

          ttATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTGAATTAAAACTTCACTTCAAAgttagtagctttt                                                                               <  1:3674569‑M2/91‑14 (MQ=255)

           tATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagcttttt                                                                              >  1:1231598‑M2/1‑77 (MQ=255)

             tGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagctttttct                                                                            <  1:2336594‑M2/91‑17 (MQ=255)

             tGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGa                                                                            <  1:1058311/91‑1 (MQ=255)

              gTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGat                                                                           >  1:574407/1‑91 (MQ=255)

               tctcAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGatt                                                                          >  1:3363170/1‑91 (MQ=255)

                 tcAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGattat                                                                        >  1:1279309/1‑91 (MQ=255)

                 tcAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGattat                                                                        >  1:1675269/1‑91 (MQ=255)

                   aaGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGAttattt                                                                      >  1:4077511/1‑91 (MQ=255)

                     gCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAATCTTCACTTCAAAGTTAGTAGCTTTTTGAttatttat                                                                    <  1:1145456/91‑1 (MQ=255)

                     gCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGAttatttat                                                                    <  1:1145362/91‑1 (MQ=255)

                     gCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGAttatttat                                                                    <  1:1145240/91‑1 (MQ=255)

                        catcatATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGt                                                                 >  1:4112127/1‑91 (MQ=255)

                         atcatATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGtt                                                                >  1:2759359/1‑91 (MQ=255)

                         atcatATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGtt                                                                >  1:464099/1‑91 (MQ=255)

                         atcatATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGtt                                                                >  1:4126753/1‑91 (MQ=255)

                          tcatATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGttt                                                               >  1:3715060/1‑91 (MQ=255)

                          tcatATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGttt                                                               >  1:1384408/1‑91 (MQ=255)

                          tcatATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGttt                                                               >  1:136361/1‑91 (MQ=255)

                           catATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTg                                                              >  1:1671891/1‑91 (MQ=255)

                           catATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTg                                                              >  1:3927861/1‑91 (MQ=255)

                           catATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTg                                                              <  1:2419945/91‑1 (MQ=255)

                            atatatAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGa                                                             <  1:3262059/91‑1 (MQ=255)

                            atatatAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGa                                                             >  1:1005913/1‑91 (MQ=255)

                               tataAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTc                                                          >  1:661883/1‑91 (MQ=255)

                               tataAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTc                                                          <  1:2938641/91‑1 (MQ=255)

                                ataAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCt                                                         <  1:695649/91‑1 (MQ=255)

                                ataAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCt                                                         >  1:1083445/1‑91 (MQ=255)

                                 taAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCtt                                                        <  1:3443556/91‑1 (MQ=255)

                                 taAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCtt                                                        <  1:3443491/91‑1 (MQ=255)

                                 taAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCtt                                                        <  1:3443538/91‑1 (MQ=255)

                                  aaaGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCttt                                                       <  1:3567340/91‑1 (MQ=255)

                                    aGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCttttt                                                     >  1:612999/1‑91 (MQ=255)

                                     gAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTg                                                    <  1:2937074/91‑1 (MQ=255)

                                       aaaaGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGtt                                                  <  1:2730619/91‑1 (MQ=255)

                                        aaaGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTc                                                 <  1:1143426/91‑1 (MQ=255)

                                         aaGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagctttttctttatatatgatgagcttgagacataaat                                                <  1:2327493‑M2/91‑45 (MQ=255)

                                         aaGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCg                                                <  1:2761739/91‑1 (MQ=255)

                                          aGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGt                                               <  1:250197/91‑1 (MQ=255)

                                          aGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGt                                               >  1:1724407/1‑91 (MQ=255)

                                          aGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGt                                               >  1:886462/1‑91 (MQ=255)

                                            ctactaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGttt                                             >  1:2514531/1‑91 (MQ=255)

                                            ctactaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGttt                                             >  1:2913841/1‑91 (MQ=255)

                                            ctactaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTCTTGTTCGttt                                             >  1:1216573/1‑91 (MQ=255)

                                            ctactaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTCTTTGTTCGttt                                             <  1:340807/91‑1 (MQ=255)

                                             tactaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagctttttctttatatatgatgagcttgagacataaatcaat                                            <  1:2515682‑M2/91‑49 (MQ=255)

                                             tactaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTa                                            >  1:2430428/1‑91 (MQ=255)

                                             tactaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTa                                            >  1:740430/1‑91 (MQ=255)

                                             tactaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTa                                            >  1:3367479/1‑91 (MQ=255)

                                              actaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTAc                                           >  1:9453/1‑91 (MQ=255)

                                              actaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTAc                                           >  1:9431/1‑91 (MQ=255)

                                              actaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTAc                                           >  1:824625/1‑91 (MQ=255)

                                              actaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTAc                                           >  1:9401/1‑91 (MQ=255)

                                              actaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTAc                                           >  1:151038/1‑91 (MQ=255)

                                               ctaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTAcc                                          >  1:1284110/1‑91 (MQ=255)

                                               ctaACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTAcc                                          >  1:2968306/1‑91 (MQ=255)

                                                taACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCt                                         <  1:3889143/91‑1 (MQ=255)

                                                 aaCAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAgttagtagctttttctttatatatgatgagcttgagacataaatcaatgttc                                        <  1:3946805‑M2/91‑53 (MQ=255)

                                                   cAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCa                                      <  1:2106022/91‑1 (MQ=255)

                                                      ttggtggtGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATaa                                   <  1:1827044/89‑1 (MQ=255)

                                                       gggTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAAt                                  <  1:2070055/91‑1 (MQ=255)

                                                        ggtggtGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATg                                 <  1:1864708/91‑1 (MQ=255)

                                                        ggtggtGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATg                                 <  1:257069/91‑1 (MQ=255)

                                                         gtggcgAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGa                                >  1:2108676/1‑91 (MQ=255)

                                                         gtggcgAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGa                                >  1:2109158/1‑91 (MQ=255)

                                                          tggtgAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGAc                               >  1:2836629/1‑91 (MQ=255)

                                                           ggtgAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACt                              >  1:4074073/1‑91 (MQ=255)

                                                             tgAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTgg                            >  1:3125500/1‑91 (MQ=255)

                                                             tgAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTgg                            >  1:716100/1‑91 (MQ=255)

                                                              gAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGt                           <  1:2315771/91‑1 (MQ=255)

                                                              gAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGt                           <  1:1048539/91‑1 (MQ=255)

                                                              gAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGt                           <  1:1097965/91‑1 (MQ=255)

                                                                 tttAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTaaa                        >  1:3832884/1‑91 (MQ=255)

                                                                 tttAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTaaa                        >  1:147784/1‑91 (MQ=255)

                                                                  ttaattaaAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTaaaa                       >  1:3479410/1‑91 (MQ=255)

                                                                   taattaaAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAAt                      <  1:2108032/91‑1 (MQ=255)

                                                                    aattaaAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATc                     <  1:1621784/91‑1 (MQ=255)

                                                                     attaaAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCa                    >  1:2806209/1‑91 (MQ=255)

                                                                      ttaaAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCAt                   <  1:1919579/91‑1 (MQ=255)

                                                                        aaaaCTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTg                 <  1:1834336/91‑1 (MQ=255)

                                                                        aaaaCTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTg                 <  1:1834321/91‑1 (MQ=255)

                                                                         aaaCTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTgg                >  1:1650794/1‑91 (MQ=255)

                                                                               cacttcaAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTGGTTTTCt          <  1:4019998/91‑1 (MQ=255)

                                                                               cacttcaAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTGGTTTTCt          >  1:2563243/1‑91 (MQ=255)

                                                                                 cttcaAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTGGTTTTCTAg        <  1:2921437/91‑1 (MQ=255)

                                                                                  ttcaAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTGGTTTTCTAGc       >  1:2693857/1‑91 (MQ=255)

                                                                                  ttcaAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTGGTTTTCTAGc       <  1:134861/91‑1 (MQ=255)

                                                                                  ttcaAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTGGTTTTCTAGc       >  1:248564/1‑91 (MQ=255)

                                                                                       aGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTGGTTTTCTAGCTGttt  >  1:3326931/1‑91 (MQ=255)

GAACATTGATTTATGTCTCAAGCTCATCATATATAAAGAAAAAGCTACTAACAATGGGTGGTGAGTTTAATTAAAACTTCACTTCAAAGTTAGTAGCTTTTTGATTATTTATTGTTTGATTCTTTTTGTTCGTTTACCTTCATAATGACTGGTAAAATCATTGGTTTTCTAGCTGTTT  >  USA300TCH1516_ALE/1098266‑1098443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.