| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1119593 = | 104 (1.060) | 8 (0.100) | 4/136 | NT | 9.4% | intergenic (+12/+297) | typA/USA300HOU_RS05545 | GTP‑binding protein TypA/BipA/hypothetical protein |
| ? | USA300TCH1516_ALE | 1119635 = | 65 (0.780) | intergenic (+54/+255) | typA/USA300HOU_RS05545 | GTP‑binding protein TypA/BipA/hypothetical protein | |||||
GAAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1119694‑1119593‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA > USA300TCH1516_ALE/1119635‑1119724 GAAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCA > 1:809435/1‑91 AAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAG < 1:1190487/91‑1 AAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGC > 1:576242/1‑91 AAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGC > 1:1783721/1‑91 AATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCc > 1:3107051/1‑90 AATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCT < 1:1436725/91‑1 AATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCT < 1:3401262/91‑1 AATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCT < 1:3400771/91‑1 TGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTC < 1:650931/91‑1 TGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTC > 1:2136216/1‑91 TGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTC < 1:2460042/91‑1 TGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTC < 1:2460195/91‑1 GTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCT > 1:2239249/1‑91 TGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTC < 1:2917838/91‑1 GAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCT > 1:1631298/1‑91 GAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCT > 1:2017907/1‑91 AAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTT > 1:2644974/1‑91 AAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTT > 1:2683714/1‑91 AAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTT > 1:587949/1‑91 AGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTT > 1:2750256/1‑91 AGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTT > 1:3610212/1‑91 AGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTT > 1:3802767/1‑91 AAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAT > 1:3750893/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATT > 1:4016478/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATT > 1:4016349/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATT > 1:2453208/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATT > 1:666803/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATT > 1:1492471/1‑91 GCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTT > 1:2750351/1‑91 CTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTT < 1:1943149/91‑1 AGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTACCTTGTTTAT > 1:3976045/1‑91 TCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGAT < 1:2577100/91‑1 TCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGAT > 1:685708/1‑91 CTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATA > 1:3770537/1‑91 CTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATA < 1:2519156/91‑1 TTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAT < 1:1083575/91‑1 TTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAT > 1:1271790/1‑91 TTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAT < 1:2267686/91‑1 TTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAT > 1:1272137/1‑91 TTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATT < 1:3868776/91‑1 TTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATT < 1:3868532/91‑1 TGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA < 1:1547920/91‑1 GAAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1119694‑1119593‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA > USA300TCH1516_ALE/1119635‑1119724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |