BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1119593 =	104 (1.060)	8 (0.100)	4/136	NT	9.4%	intergenic (+12/+297)	typA/USA300HOU_RS05545	GTP‑binding protein TypA/BipA/hypothetical protein
*	?	USA300TCH1516_ALE	1119635 =	65 (0.780)	8 (0.100)	4/136	NT	9.4%	intergenic (+54/+255)	typA/USA300HOU_RS05545	GTP‑binding protein TypA/BipA/hypothetical protein

Only 100 of 119 total aligned reads displayed.

AAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA  >  USA300TCH1516_ALE/1119546‑1119724

aaGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTgg                                                                                          >  1:2229863/1‑91 (MQ=255)

aaGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTgg                                                                                          <  1:1941103/91‑1 (MQ=255)

aaGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTgg                                                                                          >  1:3734172/1‑91 (MQ=255)

         aaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataata                                                                                 <  1:3653426/91‑1 (MQ=255)

         aaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataata                                                                                 <  1:3653380/91‑1 (MQ=255)

           acaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAtt                                                                               >  1:2681810/1‑91 (MQ=255)

            caaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAttt                                                                              <  1:3504557/91‑1 (MQ=255)

            caaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAttt                                                                              <  1:3506488/91‑1 (MQ=255)

             aaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTg                                                                             <  1:3405070/91‑1 (MQ=255)

              aaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGa                                                                            >  1:3943096/1‑91 (MQ=255)

               atgatgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaa                                                                           <  1:316987/91‑1 (MQ=255)

                 gatgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaa                                                                         >  1:2571836/1‑91 (MQ=255)

                  atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                        <  1:3280958/91‑1 (MQ=255)

                  atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                        >  1:3261693/1‑91 (MQ=255)

                  atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                        <  1:3280986/91‑1 (MQ=255)

                  atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                        >  1:3515313/1‑91 (MQ=255)

                  atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                        >  1:4118251/1‑91 (MQ=255)

                  atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                        >  1:4118286/1‑91 (MQ=255)

                  atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                        <  1:1445575/91‑1 (MQ=255)

                  atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                        <  1:1446050/91‑1 (MQ=255)

                   tgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAg                                                                       <  1:467527/91‑1 (MQ=255)

                    gCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgt                                                                      >  1:3129791/1‑91 (MQ=255)

                    gCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgt                                                                      >  1:3876439/1‑91 (MQ=255)

                     cAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgtg                                                                     <  1:4127258/91‑1 (MQ=255)

                      aaGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgtgt                                                                    <  1:538073/91‑1 (MQ=255)

                       aGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGTAAGTTGCTTAGCTTCTCTTTTGTCATATAATATTTGAAAAAGTGtt                                                                   <  1:3284750/91‑1 (MQ=255)

                         aaaaCGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTa                                                                 <  1:71478/91‑1 (MQ=255)

                              gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc                                                            <  1:580338/91‑1 (MQ=255)

                              gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc                                                            <  1:2490124/91‑1 (MQ=255)

                               aataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCt                                                           <  1:800740/91‑1 (MQ=255)

                               aataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCt                                                           >  1:363418/1‑91 (MQ=255)

                                ataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCta                                                          >  1:437754/1‑91 (MQ=255)

                                ataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGATTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCta                                                          >  1:4137091/1‑91 (MQ=255)

                                 taatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtat                                                         <  1:2018075/91‑1 (MQ=255)

                                 taatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtat                                                         <  1:3670366/91‑1 (MQ=255)

                                 taatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtat                                                         >  1:3716056/1‑91 (MQ=255)

                                 taatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtat                                                         <  1:2576069/91‑1 (MQ=255)

                                  aatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtatt                                                        >  1:1945741/1‑91 (MQ=255)

                                   atTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtatta                                                       <  1:2042507/91‑1 (MQ=255)

                                   atTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtatta                                                       <  1:902264/91‑1 (MQ=255)

                                    tttAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtattat                                                      >  1:1002149/1‑91 (MQ=255)

                                    tttAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtattat                                                      >  1:549219/1‑91 (MQ=255)

                                     ttAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTattatt                                                     >  1:620707/1‑91 (MQ=255)

                                      tAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTAttt                                                    >  1:1405348/1‑91 (MQ=255)

                                        aCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTcc                                                  <  1:3509635/91‑1 (MQ=255)

                                         cATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCt                                                 <  1:2841711/91‑1 (MQ=255)

                                         cATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCt                                                 <  1:3096656/91‑1 (MQ=255)

                                            aataaAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGtt                                              >  1:2868722/1‑91 (MQ=255)

                                             ataaAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTa                                             >  1:3049256/1‑91 (MQ=255)

                                               AAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACt                                           >  1:3802767‑M1/1‑91 (MQ=255)

                                               AAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACt                                           >  1:3610212‑M1/1‑91 (MQ=255)

                                                AAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACtt                                          >  1:2683714‑M1/1‑91 (MQ=255)

                                                AAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACtt                                          >  1:587949‑M1/1‑91 (MQ=255)

                                                 AAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACttt                                         >  1:2644974‑M1/1‑91 (MQ=255)

                                                  AGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTc                                        >  1:2017907‑M1/1‑91 (MQ=255)

                                                  AGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTc                                        >  1:1631298‑M1/1‑91 (MQ=255)

                                                   GAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTca                                       <  1:2917838‑M1/91‑1 (MQ=255)

                                                    AGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcac                                      >  1:2239249‑M1/1‑91 (MQ=255)

                                                     GAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcaca                                     <  1:650931‑M1/91‑1 (MQ=255)

                                                     GAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcaca                                     <  1:2460195‑M1/91‑1 (MQ=255)

                                                     GAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcaca                                     <  1:2460042‑M1/91‑1 (MQ=255)

                                                     GAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcaca                                     >  1:2136216‑M1/1‑91 (MQ=255)

                                                      aagctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAt                                    >  1:3750893‑M2/36‑91 (MQ=255)

                                                       gGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                   >  1:3107051‑M1/2‑91 (MQ=255)

                                                       agctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                   >  1:2453208‑M2/35‑91 (MQ=255)

                                                       agctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                   >  1:666803‑M2/35‑91 (MQ=255)

                                                       agctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                   >  1:4016478‑M2/35‑91 (MQ=255)

                                                       agctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                   >  1:4016349‑M2/35‑91 (MQ=255)

                                                       AGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                   <  1:3400771‑M1/91‑1 (MQ=255)

                                                       AGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                   <  1:1436725‑M1/91‑1 (MQ=255)

                                                        gctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAttt                                  >  1:2750351‑M2/34‑91 (MQ=255)

                                                        GCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAttt                                  >  1:1783721‑M1/1‑91 (MQ=255)

                                                         ctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtttt                                 <  1:1943149‑M2/59‑1 (MQ=255)

                                                         CTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtttt                                 <  1:1190487‑M1/91‑1 (MQ=255)

                                                          TGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTc                                >  1:809435‑M1/1‑91 (MQ=255)

                                                           gAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCa                               <  1:1703314/91‑1 (MQ=255)

                                                            aGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCaa                              >  1:3488940/1‑91 (MQ=255)

                                                              cGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAAt                            >  1:2905787/1‑91 (MQ=255)

                                                                  gAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCt                        <  1:1455116/91‑1 (MQ=255)

                                                                     aGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAAc                     <  1:227269/91‑1 (MQ=255)

                                                                     aGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAAc                     >  1:2499929/1‑91 (MQ=255)

                                                                      gTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACt                    <  1:880215/91‑1 (MQ=255)

                                                                      gTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACt                    <  1:1750378/91‑1 (MQ=255)

                                                                         gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt                 >  1:2205237/1‑91 (MQ=255)

                                                                         gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt                 >  1:2403219/1‑91 (MQ=255)

                                                                          cTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGtt                <  1:1204862/91‑1 (MQ=255)

                                                                          cTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGtt                >  1:3739909/1‑91 (MQ=255)

                                                                            tAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTa              <  1:2328398/91‑1 (MQ=255)

                                                                            tAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTa              <  1:2328703/91‑1 (MQ=255)

                                                                            tAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTa              <  1:2378504/91‑1 (MQ=255)

                                                                             agcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTACCTTGTTTAt             >  1:3976045‑M2/13‑91 (MQ=255)

                                                                                   tcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGat       <  1:2577100‑M2/85‑1 (MQ=255)

                                                                                    cttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGata      >  1:3770537‑M2/6‑91 (MQ=255)

                                                                                     ttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGatat     >  1:1271790‑M2/5‑91 (MQ=255)

                                                                                     ttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGatat     >  1:1272137‑M2/5‑91 (MQ=255)

                                                                                     ttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGatat     <  1:2267686‑M2/87‑1 (MQ=255)

                                                                                     ttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGatat     <  1:1083575‑M2/87‑1 (MQ=255)

                                                                                      tttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAtt    <  1:3868532‑M2/88‑1 (MQ=255)

                                                                                      tttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAtt    <  1:3868776‑M2/88‑1 (MQ=255)

                                                                                        tGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTaa  <  1:1547920‑M2/90‑1 (MQ=255)

AAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA  >  USA300TCH1516_ALE/1119546‑1119724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.