| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1129300 | 66 (0.670) | 4 (0.050) | 4/144 | NT | 6.0% | intergenic (+78/‑249) | USA300HOU_RS05575/USA300HOU_RS05585 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1129322 | 67 (0.760) | intergenic (+100/‑227) | USA300HOU_RS05575/USA300HOU_RS05585 | hypothetical protein/hypothetical protein | |||||
AAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1129203‑1129300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggacagttAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATTTG < USA300TCH1516_ALE/1129322‑1129233 AAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCG > 1:1223671/1‑91 AGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGG > 1:1008536/1‑91 AGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGG > 1:1055344/1‑91 AGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGG > 1:1706029/1‑91 AGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGG < 1:1905452/91‑1 AGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGG > 1:1006780/1‑91 ACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAG > 1:3237525/1‑91 ACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAG > 1:1591675/1‑91 ACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAG > 1:1593603/1‑91 ACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAG > 1:3237515/1‑91 ACATTTGGTCATTAATATGCTTATACAAATGATACTAATATGATAAGGCAATTTGTTATATCTGGTTTTTTGATGAAGAATAGTCGGCCAG > 1:1544197/1‑91 ATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTAAGGTATCAAATGAATACCA < 1:2002975/91‑1 ACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTAAGGTATCAAATGAATACCATC < 1:2668983/91‑1 CAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTAAGGTATCAAATGAATACCATCA < 1:2756341/91‑1 AATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTAAGGTATCAAATGAATACCATCAAC < 1:1296944/91‑1 GGACAGTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTA < 1:2752003/91‑1 GACAGTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTAT < 1:1867226/91‑1 GACAGTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTAT < 1:1491475/91‑1 ACAGTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATC > 1:2840149/1‑91 ACAGTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATC > 1:724995/1‑91 CAGTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCA < 1:4109111/91‑1 AGTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCAT < 1:3086560/91‑1 GTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATT < 1:164661/91‑1 GTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATT < 1:3603996/91‑1 GTTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATT < 1:679832/91‑1 TTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATTT < 1:3563949/91‑1 TTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATTT < 1:510636/91‑1 TTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATTT < 1:510637/91‑1 TTAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATTT < 1:510720/91‑1 TAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATTTG < 1:743523/91‑1 AAGCAACATTTGGTCATTAATATGCTTATACAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1129203‑1129300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggacagttAAGGTATCAAATGAATACCATCAACTGTCCGACTATTCTTCATCAAAAAACCTGATAAAACAAATTGCCTTATCAGATTAGTATCATTTG < USA300TCH1516_ALE/1129322‑1129233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |