BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1129300	66 (0.670)	4 (0.050)	4/144	NT	6.0%	intergenic (+78/‑249)	USA300HOU_RS05575/USA300HOU_RS05585	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1129322	67 (0.760)	4 (0.050)	4/144	NT	6.0%	intergenic (+100/‑227)	USA300HOU_RS05575/USA300HOU_RS05585	hypothetical protein/hypothetical protein

Only 100 of 115 total aligned reads displayed.

CAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAA  >  USA300TCH1516_ALE/1129233‑1129412

cctatctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTa                                                                                           >  1:1957682‑M1/61‑91 (MQ=255)

cAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTa                                                                                           <  1:743523‑M2/91‑2 (MQ=255)

 aaaTGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaa                                                                                          <  1:3563949‑M2/91‑3 (MQ=255)

 aaaTGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaa                                                                                          <  1:510636‑M2/91‑3 (MQ=255)

 aaaTGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaa                                                                                          <  1:510720‑M2/91‑3 (MQ=255)

 aaaTGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaa                                                                                          <  1:510637‑M2/91‑3 (MQ=255)

  tatctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAAc                                                                                         >  1:2052634‑M1/59‑91 (MQ=255)

  tatctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAAc                                                                                         >  1:2980211‑M1/59‑91 (MQ=255)

  aaTGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaac                                                                                         <  1:164661‑M2/91‑4 (MQ=255)

  aaTGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaac                                                                                         <  1:3603996‑M2/91‑4 (MQ=255)

  aaTGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaac                                                                                         <  1:679832‑M2/91‑4 (MQ=255)

   aTGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaact                                                                                        <  1:3086560‑M2/91‑5 (MQ=255)

    tGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaactg                                                                                       <  1:4109111‑M2/91‑6 (MQ=255)

     gATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaactgt                                                                                      >  1:2840149‑M2/1‑85 (MQ=255)

     gATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaactgt                                                                                      >  1:724995‑M2/1‑85 (MQ=255)

     ctttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTGt                                                                                      >  1:1063710‑M1/56‑91 (MQ=255)

      tttatgttttcaggttgaatttcattattaagattaaaatatgtataaaaaaatGGACAGTTGATGGTATTCATTTGATACCTTAACTGTc                                                                                     >  1:1376350‑M1/55‑91 (MQ=255)

      aTACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaactgtc                                                                                     <  1:1867226‑M2/91‑8 (MQ=255)

      aTACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaactgtc                                                                                     <  1:1491475‑M2/91‑8 (MQ=255)

       tACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTaactgtcc                                                                                    <  1:2752003‑M2/91‑9 (MQ=255)

         cTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCGTTTGATACCTTAACTGTCCAt                                                                                  >  1:1008632/1‑91 (MQ=255)

         cTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAt                                                                                  >  1:505923/1‑91 (MQ=255)

         cTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAt                                                                                  <  1:3578993/91‑1 (MQ=255)

          tAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtt                                                                                 >  1:3716286/1‑91 (MQ=255)

           aaTCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAttt                                                                                >  1:865334/1‑91 (MQ=255)

            aTCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAtttt                                                                               >  1:13754/1‑91 (MQ=255)

               tGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCAttttttt                                                                            <  1:102528/91‑1 (MQ=255)

                 aTAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTtat                                                                          >  1:2617621/1‑91 (MQ=255)

                   aaGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATAc                                                                        >  1:1125117/1‑91 (MQ=255)

                   aaGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATAc                                                                        <  1:2584945/91‑1 (MQ=255)

                    aGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACa                                                                       >  1:2824736/1‑91 (MQ=255)

                    aGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACa                                                                       <  1:1308168/91‑1 (MQ=255)

                     ggCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACat                                                                      >  1:4007653/1‑91 (MQ=255)

                     ggCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACat                                                                      >  1:1861125/1‑91 (MQ=255)

                        aaTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAtt                                                                   <  1:2769193/91‑1 (MQ=255)

                         aTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAttt                                                                  <  1:1459183/91‑1 (MQ=255)

                         aTTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAttt                                                                  <  1:2290082/91‑1 (MQ=255)

                          tttGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATAtttt                                                                 >  1:1954375/1‑91 (MQ=255)

                           ttGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTa                                                                <  1:3664187/91‑1 (MQ=255)

                                ttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCtt                                                           >  1:3984581/1‑91 (MQ=255)

                                ttATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCtt                                                           <  1:35983/91‑1 (MQ=255)

                                  aTCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATAGTATTCATTTGATACCTTAACTGTCCAATTTTTTATACATATTTTAACCTtaa                                                         >  1:3865078/1‑91 (MQ=255)

                                   tCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTtaat                                                        <  1:3421109/91‑1 (MQ=255)

                                   tCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTtaat                                                        >  1:1151149/1‑91 (MQ=255)

                                      ggTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                     <  1:9794/91‑1 (MQ=255)

                                      ggTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTaataat                                                     <  1:1699363/91‑1 (MQ=255)

                                       gTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATg                                                    >  1:819073/1‑91 (MQ=255)

                                            ttGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAAtt                                               >  1:2739498/1‑91 (MQ=255)

                                            ttGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAAtt                                               >  1:1041855/1‑91 (MQ=255)

                                            ttGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAAtt                                               >  1:1041856/1‑91 (MQ=255)

                                              gatgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATATTGAACTTCa                                             >  1:401830/1‑91 (MQ=255)

                                              gatgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCa                                             <  1:2872262/91‑1 (MQ=255)

                                              gatgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCa                                             >  1:527419/1‑91 (MQ=255)

                                              gatgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCa                                             >  1:401744/1‑91 (MQ=255)

                                               atgaAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCaa                                            <  1:1115956/91‑1 (MQ=255)

                                                 gaagaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAAcc                                          >  1:880308/1‑91 (MQ=255)

                                                 gaagaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAAcc                                          <  1:2313797/91‑1 (MQ=255)

                                                 gaagaaTAGTCGGACAGTTGATGGTACTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAAcc                                          <  1:2314133/91‑1 (MQ=255)

                                                   agaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTg                                        >  1:3405782/1‑91 (MQ=255)

                                                    gaaTAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGa                                       <  1:942578/91‑1 (MQ=255)

                                                       tAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGaaaa                                    >  1:442903/1‑91 (MQ=255)

                                                          tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAGACAt                                 >  1:3463098/1‑91 (MQ=255)

                                                          tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACAt                                 >  1:4123464/1‑91 (MQ=255)

                                                          tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACAt                                 <  1:1181814/91‑1 (MQ=255)

                                                          tCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACAt                                 >  1:3831592/1‑91 (MQ=255)

                                                             GACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                              <  1:1787063‑M1/91‑1 (MQ=255)

                                                             GACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATaaa                              >  1:1645895‑M1/1‑91 (MQ=255)

                                                              ACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAg                             <  1:1267584‑M1/91‑1 (MQ=255)

                                                                AGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGAt                           >  1:1523901‑M1/1‑91 (MQ=255)

                                                                AGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGAt                           <  1:1177102‑M1/91‑1 (MQ=255)

                                                                AGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGAt                           <  1:3125245‑M1/91‑1 (MQ=255)

                                                                   tGATGGTATTCATTTGATACCTTaactgtccgactattcttcatcaaaaaacctgataaaacaaattgccttatcagattagtatcatttg                        <  1:2756341‑M2/91‑69 (MQ=255)

                                                                   TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                        <  1:569207‑M1/91‑1 (MQ=255)

                                                                   TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                        <  1:569292‑M1/91‑1 (MQ=255)

                                                                   TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                        <  1:569194‑M1/91‑1 (MQ=255)

                                                                   TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                        <  1:3632878‑M1/91‑1 (MQ=255)

                                                                   TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                        <  1:3776837‑M1/91‑1 (MQ=255)

                                                                   TGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAgg                        <  1:2402544‑M1/91‑1 (MQ=255)

                                                                    gATGGTATTCATTTGATACCTTaactgtccgactattcttcatcaaaaaacctgataaaacaaattgccttatcagattagtatcatttgt                       <  1:2668983‑M2/91‑70 (MQ=255)

                                                                    gATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGt                       <  1:4121954/91‑1 (MQ=255)

                                                                    gATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGt                       <  1:1823237/91‑1 (MQ=255)

                                                                    gATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGt                       <  1:1823135/91‑1 (MQ=255)

                                                                      tGGTATTCATTTGATACCTTaactgtccgactattcttcatcaaaaaacctgataaaacaaattgccttatcagattagtatcatttgtat                     <  1:2002975‑M2/91‑72 (MQ=255)

                                                                      tGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTa                     <  1:789960/91‑1 (MQ=255)

                                                                         tATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGa                  <  1:1919213/91‑1 (MQ=255)

                                                                           ttCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGata                >  1:1069297/1‑91 (MQ=255)

                                                                            tCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGatat               <  1:1662512/91‑1 (MQ=255)

                                                                             cATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGAtata              >  1:3129738/1‑91 (MQ=255)

                                                                             cATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGAtata              <  1:1164501/91‑1 (MQ=255)

                                                                             cATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGAtata              >  1:3223785/1‑91 (MQ=255)

                                                                              aTTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATag             >  1:1479424/1‑91 (MQ=255)

                                                                              aTTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAAGAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATag             >  1:4137002/1‑91 (MQ=255)

                                                                                 tGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgt          <  1:1256842/91‑1 (MQ=255)

                                                                                  gATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgtg         <  1:1674326/91‑1 (MQ=255)

                                                                                   aTACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgtgt        >  1:1585985/1‑91 (MQ=255)

                                                                                   aTACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAgtgt        >  1:30656/1‑91 (MQ=255)

                                                                                    tACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTa       >  1:1868517/1‑91 (MQ=255)

                                                                                     aCCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAg      <  1:2133787/91‑1 (MQ=255)

                                                                                     aCCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAg      >  1:3807806/1‑91 (MQ=255)

                                                                                       cTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAggg    <  1:2373132/91‑1 (MQ=255)

CAAATGATACTAATCTGATAAGGCAATTTGTTTTATCAGGTTTTTTGATGAAGAATAGTCGGACAGTTGATGGTATTCATTTGATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAA  >  USA300TCH1516_ALE/1129233‑1129412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.