| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1131322 = | 82 (0.830) | 4 (0.040) | 5/148 | NT | 5.1% | coding (704/927 nt) | glpQ1 | putative glycerophosphodiester phosphodiesterase 1 |
| ? | USA300TCH1516_ALE | 1131337 = | 74 (0.810) | coding (689/927 nt) | glpQ1 | putative glycerophosphodiester phosphodiesterase 1 | |||||
AAATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1131415‑1131322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaccaCCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAAAACGA > USA300TCH1516_ALE/1131337‑1131426 AAATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTA < 1:1153547/91‑1AAATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTA < 1:1465293/91‑1 AATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTAC < 1:2731021/91‑1 AATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTAC < 1:1131318/91‑1 AATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGGGGTAGGTA‑CTAC < 1:3194942/91‑1 ATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTACC < 1:2715192/91‑1 ATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTACC < 1:2715240/91‑1 TTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTACCA < 1:3512395/91‑1 TTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTACCA < 1:1676776/91‑1 GCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTA‑GTACCTACCACC < 1:3602411/91‑1 TCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTA‑GTACCTACCACCTAATAAATGATAT < 1:2489410/91‑1 GCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGTAC‑CTACCACCTAATAAATGATATTT < 1:2350304/91‑1 CCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTA‑GTACCTACCACCTAATAAATGATATTTTAAAAATGCTTCTG < 1:2724859/91‑1 AGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTA‑GTACCTACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACT < 1:75166/91‑1 GGTA‑CTACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTA > 1:2903673/1‑91 TA‑CTACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATT > 1:1865445/1‑91 CTACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAA > 1:1711385/1‑91 CTACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAA > 1:2512906/1‑91 CTACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAA > 1:2512905/1‑91 CTACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAA > 1:1711624/1‑91 TACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAAA < 1:2874921/91‑1 ACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAAAA < 1:280719/91‑1 ACCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAAAA < 1:2026467/91‑1 CCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAAAAC < 1:2818359/91‑1 CCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAAAAC < 1:2818892/91‑1 CCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAAAAC > 1:536708/1‑91 CCACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTACAATTTTATTAAAAC < 1:1644933/91‑1 CACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAAAACG > 1:3710300/1‑91 ACCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAGAACGA > 1:1438004/1‑91 AAATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACAGAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTA‑CTACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1131415‑1131322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaccaCCTAATAAATGATATTTTAAAAATGCTTCTGTAACTTCCTGTTGGCTAGCACCAATTGCGACGGATCCTTGTGCAATTTTATTAAAACGA > USA300TCH1516_ALE/1131337‑1131426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |