| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1134027 | 85 (0.860) | 8 (0.100) | 5/132 | NT | 8.7% | intergenic (+21/+41) | coaD/USA300HOU_RS05620 | Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase |
| ? | USA300TCH1516_ALE | = 1134045 | 98 (1.210) | intergenic (+39/+23) | coaD/USA300HOU_RS05620 | Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase | |||||
AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1133924‑1134027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagtattttaggATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAATTC < USA300TCH1516_ALE/1134045‑1133956 AAGAAGTTGTAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATA > 1:2090767/1‑91 GAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAAC < 1:1938550/91‑1 AGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAG > 1:1332115/1‑91 AGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAG < 1:400200/91‑1 TTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTA > 1:704900/1‑91 TTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTA > 1:3908413/1‑91 TTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTA > 1:3528851/1‑91 TTGCAGCTTATCGAGCAGATATTTCTGAATTCGCTCCCCCTTATGTCGAAAAGGCATTGCAGAAGAAATTTAAGTAATAAAAATAACAGTA > 1:3313323/1‑91 TGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAGTAAAAATAACAGTAT < 1:3530851/91‑1 TGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAT < 1:3260484/91‑1 TGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAT < 1:1379787/91‑1 TGCAGCTTATCGAGCAGATATTTCTGAATTCGGTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTATTAAAAATAACAGTAT < 1:3531013/91‑1 TGCAGCTTATCGAGCAGATATTTCTGAATTCGATCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTATTAAAAATAACAGTAT < 1:3531152/91‑1 GCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATT > 1:3321806/1‑91 CAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTT > 1:886164/1‑91 GCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTA > 1:1126537/1‑91 TTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGG < 1:832866/91‑1 TCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATA < 1:1967402/91‑1 TTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTA < 1:3761879/91‑1 TTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTA < 1:3762244/91‑1 GTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAA < 1:118560/91‑1 ACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTG < 1:1270882/91‑1 ACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTG < 1:3339096/91‑1 CCTTCTGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGT < 1:3453652/91‑1 CCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGT < 1:3453948/91‑1 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG < 1:2647044/91‑1 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG < 1:2647276/91‑1 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG > 1:725855/1‑91 CAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATACGGT > 1:3346472/1‑91 CAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGT > 1:2001530/1‑91 AGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTG > 1:2175354/1‑91 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCTACATAAGGTGG > 1:4025614/1‑91 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGG > 1:2549348/1‑91 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGG > 1:2712272/1‑91 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGG < 1:2668781/91‑1 TATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGA > 1:646964/1‑91 TATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGA > 1:3215865/1‑91 ATTTTAGGATTGTAAACCATGATAAACCTAAAGTACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA < 1:2058544/91‑1 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA > 1:1769763/1‑91 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA < 1:3903413/91‑1 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA > 1:1252145/1‑91 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA < 1:2058503/91‑1 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA > 1:2409388/1‑91 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA > 1:2411285/1‑91 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA > 1:2411567/1‑91 TTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAAC < 1:3994901/91‑1 TTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACG < 1:3767205/91‑1 TTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACG < 1:4071521/91‑1 TTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGA < 1:218778/91‑1 TTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGA < 1:1645476/91‑1 TAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAA < 1:2622419/91‑1 AGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAAT > 1:2997861/1‑91 GGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAATT > 1:1904377/1‑91 GATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAATTC < 1:3247745/91‑1 AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1133924‑1134027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagtattttaggATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAATTC < USA300TCH1516_ALE/1134045‑1133956 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |