| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1149421 = | 83 (0.840) | 6 (0.070) | 5/138 | NT | 7.6% | intergenic (+7/+164) | pheT_1/rnhC | Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII |
| ? | USA300TCH1516_ALE | 1149475 = | 74 (0.870) | intergenic (+61/+110) | pheT_1/rnhC | Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII | |||||
TTTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1149521‑1149421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAT > USA300TCH1516_ALE/1149475‑1149562 TTTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATA < 1:3470394/91‑1TTTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATA < 1:2686869/91‑1 TGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACA > 1:3630019/1‑91 GACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACAT > 1:424096/1‑91 GACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACAT < 1:2803300/91‑1 GACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACAT > 1:2369877/1‑91 ACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATG < 1:948363/91‑1 ACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATG < 1:450995/91‑1 ACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATG < 1:1650518/91‑1 CTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGG < 1:467664/91‑1 TTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGG > 1:2342593/1‑91 TTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGG < 1:1079691/91‑1 TTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGT < 1:2657454/91‑1 TTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGT < 1:415483/91‑1 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTa > 1:4130753/1‑90 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT > 1:2292858/1‑91 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT < 1:2423517/91‑1 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT < 1:1106493/91‑1 AAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTA > 1:812271/1‑91 AACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAA > 1:3578531/1‑91 AACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAA > 1:3579013/1‑91 CATGTTAGGGATATCAATCTACTTCAGATATCCCTA‑ACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTC > 1:1538709/1‑91 TGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCA > 1:3347491/1‑91 TTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAA > 1:3787058/1‑91 CATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACA > 1:2990095/1‑91 CATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACA > 1:3935178/1‑91 ATGGGGTTTTA‑TTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAC > 1:1023560/1‑91 TGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAC < 1:114691/91‑1 TGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAC < 1:149278/91‑1 TGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAC < 1:2176124/91‑1 GGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACT > 1:1199977/1‑91 GGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTG > 1:1864774/1‑91 GTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCA > 1:546004/1‑91 TTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAT > 1:3831250/1‑91 TTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAT > 1:1805870/1‑91 TTTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1149521‑1149421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAT > USA300TCH1516_ALE/1149475‑1149562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |