BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1149421 =	83 (0.840)	6 (0.070)	5/138	NT	7.6%	intergenic (+7/+164)	pheT_1/rnhC	Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII
*	?	USA300TCH1516_ALE	1149475 =	74 (0.870)	6 (0.070)	5/138	NT	7.6%	intergenic (+61/+110)	pheT_1/rnhC	Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII

Only 100 of 121 total aligned reads displayed.

TTAATTGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAT  >  USA300TCH1516_ALE/1149385‑1149562

 tAATTGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTa                                                                                        >  1:3150122/1‑91 (MQ=255)

  aaTTGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAt                                                                                       >  1:2668328/1‑91 (MQ=255)

   aTTGAACAAGGTGCGGTTATTAGATAATTATTTATACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAtt                                                                                      <  1:3649664/91‑1 (MQ=255)

    ttGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAttt                                                                                     >  1:2210757/1‑91 (MQ=255)

     tGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAtttt                                                                                    <  1:1443985/91‑1 (MQ=255)

       aaCAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTg                                                                                  >  1:4133332/1‑91 (MQ=255)

            ggTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTc                                                                             >  1:1006559/1‑91 (MQ=255)

            ggTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTc                                                                             <  1:3568597/91‑1 (MQ=255)

               gCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCAcc                                                                          >  1:2836168/1‑91 (MQ=255)

               gCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCAcc                                                                          >  1:2262936/1‑91 (MQ=255)

                cTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCa                                                                         >  1:3150987/1‑91 (MQ=255)

                cTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCa                                                                         >  1:1413649/1‑91 (MQ=255)

                 tGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCaa                                                                        <  1:552815/91‑1 (MQ=255)

                  gTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAAt                                                                       <  1:868569/91‑1 (MQ=255)

                      ttaGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTgg                                                                   <  1:246133/91‑1 (MQ=255)

                      ttaGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTgg                                                                   <  1:60848/91‑1 (MQ=255)

                      ttaGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTgg                                                                   <  1:1904545/91‑1 (MQ=255)

                      ttaGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTgg                                                                   <  1:1904611/91‑1 (MQ=255)

                       taGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGt                                                                  >  1:712243/1‑91 (MQ=255)

                       taGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGt                                                                  <  1:1747202/91‑1 (MQ=255)

                       taGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGt                                                                  <  1:1037827/91‑1 (MQ=255)

                        aGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGtt                                                                 >  1:1886175/1‑91 (MQ=255)

                         gATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTc                                                                <  1:3944387/91‑1 (MQ=255)

                          aTAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTcc                                                               >  1:1605706/1‑91 (MQ=255)

                          aTAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTcc                                                               >  1:2103770/1‑91 (MQ=255)

                            aaTGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCaa                                                             >  1:1945885/1‑91 (MQ=255)

                               gATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGc                                                          <  1:3364946/91‑1 (MQ=255)

                               gATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGc                                                          >  1:2638784/1‑91 (MQ=255)

                               gATTTAAACCCCATGTATAAGGATATCTGAAGTAGAGTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCCCCAATTTGGTTCCAATGc                                                          >  1:2638978/1‑91 (MQ=255)

                                  ttAAAGCCCATGTATAAGGATATCTAAAGTAGATTGATATCCCTAACATGGGGATTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAtt                                                       <  1:3857637/91‑1 (MQ=255)

                                  ttAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAtt                                                       >  1:3572177/1‑91 (MQ=255)

                                  ttAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAtt                                                       >  1:1189165/1‑91 (MQ=255)

                                  ttAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAtt                                                       >  1:1189324/1‑91 (MQ=255)

                                  ttAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAtt                                                       <  1:1623241/91‑1 (MQ=255)

                                   tAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAttt                                                      <  1:55106/91‑1 (MQ=255)

                                     tACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaa                                                    >  1:4130753‑M1/2‑91 (MQ=255)

                                     aaccccatgttagggatatcaatctacttcagatatccttatacatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaa                                                    >  1:3579013‑M2/54‑91 (MQ=255)

                                     aaccccatgttagggatatcaatctacttcagatatccttatacatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaa                                                    >  1:3578531‑M2/54‑91 (MQ=255)

                                     AACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaa                                                    <  1:2423517‑M1/91‑1 (MQ=255)

                                     AACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaa                                                    >  1:2292858‑M1/1‑91 (MQ=255)

                                      ACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaaa                                                   <  1:415483‑M1/91‑1 (MQ=255)

                                        CCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaaaaa                                                 >  1:2342593‑M1/1‑91 (MQ=255)

                                        CCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaaaaa                                                 <  1:1079691‑M1/91‑1 (MQ=255)

                                         CCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAg                                                <  1:467664‑M1/91‑1 (MQ=255)

                                          CATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGt                                               <  1:948363‑M1/91‑1 (MQ=255)

                                          CATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGt                                               <  1:450995‑M1/91‑1 (MQ=255)

                                          CATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGt                                               <  1:1650518‑M1/91‑1 (MQ=255)

                                           catgttagggatatcaatctacttcagatatccctaacatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTc                                              >  1:1538709‑M2/48‑91 (MQ=255)

                                           ATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTc                                              <  1:2803300‑M1/91‑1 (MQ=255)

                                            tgttagggatatcaatctacttcagatatccttatacatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCa                                             >  1:3347491‑M2/47‑91 (MQ=255)

                                            TGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCa                                             >  1:3630019‑M1/1‑91 (MQ=255)

                                              ttagggatatcaatctacttcagatatccttatacatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCaaa                                           >  1:3787058‑M2/45‑91 (MQ=255)

                                              TATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCaaa                                           <  1:2686869‑M1/91‑1 (MQ=255)

                                              TATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCaaa                                           <  1:3470394‑M1/91‑1 (MQ=255)

                                                taAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAaga                                         <  1:4083332/91‑1 (MQ=255)

                                                taAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAaga                                         >  1:2648876/1‑91 (MQ=255)

                                                 aaGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAagag                                        <  1:313983/91‑1 (MQ=255)

                                                 aaGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAagag                                        >  1:401345/1‑91 (MQ=255)

                                                  aGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAgg                                       <  1:2382065/91‑1 (MQ=255)

                                                   ggATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGa                                      >  1:1362347/1‑91 (MQ=255)

                                                   ggATATCTGAAGCAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGa                                      >  1:3201669/1‑91 (MQ=255)

                                                     atatCTGAAGTAGATTGATATCCTTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAAc                                    <  1:2565249/91‑1 (MQ=255)

                                                       atCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAg                                  <  1:2892347/91‑1 (MQ=255)

                                                       atCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAg                                  <  1:2891426/91‑1 (MQ=255)

                                                        tCTGATGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGc                                 >  1:3056060/1‑91 (MQ=255)

                                                        tCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGc                                 <  1:2684864/91‑1 (MQ=255)

                                                          tGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCgg                               >  1:3991749/1‑91 (MQ=255)

                                                          tGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCgg                               >  1:2637720/1‑91 (MQ=255)

                                                          tGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCgg                               >  1:1528531/1‑91 (MQ=255)

                                                            aaGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGaa                             <  1:3050176/91‑1 (MQ=255)

                                                            aaGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGaa                             >  1:3750523/1‑91 (MQ=255)

                                                              gTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATa                           <  1:710072/91‑1 (MQ=255)

                                                              gTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATa                           <  1:711278/91‑1 (MQ=255)

                                                                aGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACa                         >  1:683619/1‑91 (MQ=255)

                                                                  aTTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAga                       <  1:106370/91‑1 (MQ=255)

                                                                   ttGATATCCTTAACATGGGGTTTTATTTTTGGAATCAACAATTAGGCTTCGATTGGTTTAAAAAGTCAAAGAGGAACAGCGGAATACAgat                      >  1:3305682/1‑91 (MQ=255)

                                                                   ttGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAgat                      >  1:3820807/1‑91 (MQ=255)

                                                                   ttGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAgat                      >  1:321181/1‑91 (MQ=255)

                                                                   ttGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAgat                      >  1:1850500/1‑91 (MQ=255)

                                                                     gATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCGATGCATTTAAAAAGTCAAAGAGTAACAGCGGAATACAgatga                    <  1:1203243/91‑1 (MQ=255)

                                                                     gATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAgatga                    >  1:3815638/1‑91 (MQ=255)

                                                                     gATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAgatga                    <  1:1307894/91‑1 (MQ=255)

                                                                        atCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCGAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGc                 <  1:3310846/91‑1 (MQ=255)

                                                                         tCCCTAACATGGGGTTTTATTTTTGGGTTGACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCt                <  1:3329165/91‑1 (MQ=255)

                                                                          cccTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCtt               >  1:268270/1‑91 (MQ=255)

                                                                          cccTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCtt               >  1:926338/1‑91 (MQ=255)

                                                                            cTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCg             <  1:1773195/91‑1 (MQ=255)

                                                                             tAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGc            <  1:851273/91‑1 (MQ=255)

                                                                             tAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGc            <  1:260721/91‑1 (MQ=255)

                                                                              aaCATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTACAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGca           >  1:3497224/1‑91 (MQ=255)

                                                                                catggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGcaca         >  1:3935178‑M2/11‑91 (MQ=255)

                                                                                catggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGcaca         >  1:2990095‑M2/11‑91 (MQ=255)

                                                                                 atggggtttTA‑TTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAc       >  1:1023560‑M2/10‑91 (MQ=255)

                                                                                  tggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAc       <  1:149278‑M2/83‑1 (MQ=255)

                                                                                  tggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAc       <  1:2176124‑M2/83‑1 (MQ=255)

                                                                                  tggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAc       <  1:114691‑M2/83‑1 (MQ=255)

                                                                                   ggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACt      >  1:1199977‑M2/8‑91 (MQ=255)

                                                                                      gtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCa   >  1:546004‑M2/5‑91 (MQ=255)

                                                                                       tttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAt  >  1:1805870‑M2/4‑91 (MQ=255)

                                                                                       tttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAt  >  1:3831250‑M2/4‑91 (MQ=255)

TTAATTGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAT  >  USA300TCH1516_ALE/1149385‑1149562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.