| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1181842 = | 111 (1.130) | 9 (0.100) | 5/144 | NT | 9.2% | intergenic (+409/+65) | USA300HOU_RS05885/USA300TCH1516_01103 | hypothetical protein/tRNA‑Arg |
| ? | USA300TCH1516_ALE | 1181881 = | 77 (0.870) | intergenic (+448/+26) | USA300HOU_RS05885/USA300TCH1516_01103 | hypothetical protein/tRNA‑Arg | |||||
ATCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1181939‑1181842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA > USA300TCH1516_ALE/1181881‑1181970 ATCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTT < 1:3815543/91‑1 TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT > 1:1827409/1‑91 TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT < 1:2162463/91‑1 TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT > 1:26663/1‑91 CGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTGATACGCATTACCTAACAAAAGAGTTCCGTGATTACGGGGCTCTTTT < 1:3307615/91‑1 GTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTG > 1:368899/1‑91 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 1:1637584/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 1:827711/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 1:766131/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT > 1:2783414/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:260059/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:3945682/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:3075810/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:3076505/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:352906/91‑1 GGGGGTTCGAATCCCTCCCAGGACGATTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:3870148/91‑1 CCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCC > 1:1943637/1‑91 AAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCG > 1:2560303/1‑91 AGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAT > 1:418898/1‑91 AGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAT > 1:3260163/1‑91 GAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 1:5222/1‑91 GAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 1:3120597/1‑91 GAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 1:1747422/1‑91 AGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGG > 1:3298691/1‑91 AGTTCCGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGC > 1:2649318/1‑91 tctgTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTA < 1:2490984/87‑1 TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATC < 1:2031783/91‑1 TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATC > 1:170944/1‑91 TTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCC > 1:476899/1‑91 TTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCC < 1:3888297/91‑1 TTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCA > 1:1538929/1‑91 TTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCA > 1:2644439/1‑91 TTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCT < 1:2681023/91‑1 TGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA > 1:343800/1‑91 TGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA > 1:3169174/1‑91 ATCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1181939‑1181842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA > USA300TCH1516_ALE/1181881‑1181970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |