BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1181842 =	111 (1.130)	9 (0.100)	5/144	NT	9.2%	intergenic (+409/+65)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg
*	?	USA300TCH1516_ALE	1181881 =	77 (0.870)	9 (0.100)	5/144	NT	9.2%	intergenic (+448/+26)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg

Only 100 of 140 total aligned reads displayed.

CGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCC  >  USA300TCH1516_ALE/1181752‑1181932

tcagctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattacca                                                                                            >  1:343800‑M1/91‑91 (MQ=255)

tcagctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattacca                                                                                            >  1:3169174‑M1/91‑91 (MQ=255)

 gAATAAGTATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAGTTcaaa                                                                                           <  1:2079394/91‑1 (MQ=255)

  agctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaa                                                                                          <  1:2681023‑M1/3‑1 (MQ=255)

  aaTAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaa                                                                                          <  1:899086/91‑1 (MQ=255)

     tggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaacaa                                                                                       >  1:2644439‑M1/86‑91 (MQ=255)

      ggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaacaaa                                                                                      >  1:476899‑M1/85‑91 (MQ=255)

      ggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaacaaa                                                                                      <  1:3888297‑M1/7‑1 (MQ=255)

       gatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACaaaa                                                                                     <  1:2031783‑M1/8‑1 (MQ=255)

       gCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaaaa                                                                                     >  1:1230339/1‑91 (MQ=255)

         tagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaacaacaga                                                                                   <  1:2490984‑M1/10‑5 (MQ=255)

          tGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAaga                                                                                  <  1:1019097/91‑1 (MQ=255)

          tGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAaga                                                                                  <  1:2203190/91‑1 (MQ=255)

          tGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAaga                                                                                  <  1:1019126/91‑1 (MQ=255)

              tGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGccc                                                                              <  1:2045158/91‑1 (MQ=255)

              tGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGccc                                                                              <  1:4057438/91‑1 (MQ=255)

               gTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGcccc                                                                             <  1:1882791/91‑1 (MQ=255)

                ttttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCg                                                                            <  1:2896887/91‑1 (MQ=255)

                 tttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGt                                                                           <  1:1171198/91‑1 (MQ=255)

                 tttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGt                                                                           >  1:3976898/1‑91 (MQ=255)

                  ttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTa                                                                          >  1:1730390/1‑91 (MQ=255)

                  ttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTa                                                                          >  1:1730487/1‑91 (MQ=255)

                      ttACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCa                                                                      >  1:3036139/1‑91 (MQ=255)

                      ttACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCa                                                                      >  1:1192437/1‑91 (MQ=255)

                      ttACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCa                                                                      <  1:2962884/91‑1 (MQ=255)

                       tACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCAc                                                                     <  1:3566167/91‑1 (MQ=255)

                         cTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACgg                                                                   <  1:3340440/91‑1 (MQ=255)

                          tGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGa                                                                  <  1:3086499/91‑1 (MQ=255)

                           gTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGaa                                                                 <  1:3092063/91‑1 (MQ=255)

                            tATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                <  1:2253342/91‑1 (MQ=255)

                            gccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAA‑GAGCCCCGTAATCACGGAAct                                                               >  1:2649318‑M1/63‑91 (MQ=255)

                             ccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAAct                                                               >  1:3298691‑M1/62‑91 (MQ=255)

                              ttttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  1:1265730/1‑91 (MQ=255)

                              ttttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              <  1:2564422/91‑1 (MQ=255)

                              ttttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  1:1265731/1‑91 (MQ=255)

                              catcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  1:5222‑M1/61‑91 (MQ=255)

                              catcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  1:3120597‑M1/61‑91 (MQ=255)

                               tttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActct                                                             <  1:4749/91‑1 (MQ=255)

                               atcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActct                                                             >  1:418898‑M1/60‑91 (MQ=255)

                               atcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActct                                                             >  1:3260163‑M1/60‑91 (MQ=255)

                                ttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtt                                                            <  1:3394066/91‑1 (MQ=255)

                                ttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtt                                                            <  1:1566634/91‑1 (MQ=255)

                                 cggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAACTCttt                                                           >  1:2560303‑M1/58‑91 (MQ=255)

                                  cGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtttt                                                          >  1:273312/1‑91 (MQ=255)

                                  cGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtttt                                                          >  1:2199707/1‑91 (MQ=255)

                                  cGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtttt                                                          >  1:2894122/1‑91 (MQ=255)

                                  cGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtttt                                                          >  1:2199777/1‑91 (MQ=255)

                                    gggCTTATGCGGGGGACGTTTTGGTGACGCACCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgt                                                        >  1:707129/1‑91 (MQ=255)

                                     ggCTTATGCGGGGGATGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       <  1:1790796/91‑1 (MQ=255)

                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       <  1:2597820/91‑1 (MQ=255)

                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       <  1:2597801/91‑1 (MQ=255)

                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       >  1:1260880/1‑91 (MQ=255)

                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       <  1:2004720/91‑1 (MQ=255)

                                       cTTATGCGGGGGACGTTTTGGTGACGCATCATAGTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                     <  1:3402341/91‑1 (MQ=255)

                                       cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                     <  1:271131/91‑1 (MQ=255)

                                       cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                     <  1:272502/91‑1 (MQ=255)

                                        ttATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                    <  1:1011081/91‑1 (MQ=255)

                                        gggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                    >  1:1943637‑M1/51‑91 (MQ=255)

                                           tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                 <  1:3777631/91‑1 (MQ=255)

                                            gCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAAt                                                >  1:1326227/1‑91 (MQ=255)

                                            gCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAAt                                                >  1:1326134/1‑91 (MQ=255)

                                             cGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATg                                               <  1:1893034/91‑1 (MQ=255)

                                             cGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATg                                               <  1:355726/91‑1 (MQ=255)

                                               ggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCg                                             <  1:1239270/91‑1 (MQ=255)

                                               ggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCg                                             >  1:149311/1‑91 (MQ=255)

                                               ggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCg                                             >  1:1715051/1‑91 (MQ=255)

                                                 ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                           <  1:1491447/91‑1 (MQ=255)

                                                 ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                           <  1:1936149/91‑1 (MQ=255)

                                                 ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                           <  1:672750/91‑1 (MQ=255)

                                                   aCGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGtata                                         <  1:377011/91‑1 (MQ=255)

                                                    cGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaa                                        <  1:1756231/91‑1 (MQ=255)

                                                    cGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaa                                        <  1:350912/91‑1 (MQ=255)

                                                     gTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaa                                       <  1:3255369/91‑1 (MQ=255)

                                                       tttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaaaa                                     >  1:1847738/1‑91 (MQ=255)

                                                         tGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATa                                   >  1:3148149/1‑91 (MQ=255)

                                                            tGACGCATCCTACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCt                                <  1:3964825/91‑1 (MQ=255)

                                                              aCGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCtat                              >  1:836236/1‑91 (MQ=255)

                                                                gCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaa                            <  1:709796/91‑1 (MQ=255)

                                                                gCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaa                            >  1:3644566/1‑91 (MQ=255)

                                                                gCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaa                            >  1:3645624/1‑91 (MQ=255)

                                                                     atACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATACAAATACCTATAAACGTc                       >  1:3557409/1‑91 (MQ=255)

                                                                      tACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTcc                      <  1:1376611/91‑1 (MQ=255)

                                                                      tACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTcc                      <  1:3372456/91‑1 (MQ=255)

                                                                        cTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTg                    <  1:3243912/91‑1 (MQ=255)

                                                                        cTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTg                    <  1:55789/91‑1 (MQ=255)

                                                                        cTATATTACTGAAATTCAAAACAAAAAGAGCCCCGCAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTg                    <  1:2402921/91‑1 (MQ=255)

                                                                         tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                   >  1:1647982/1‑91 (MQ=255)

                                                                         tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                   >  1:1647291/1‑91 (MQ=255)

                                                                            atTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggag                >  1:2636477/1‑91 (MQ=255)

                                                                             ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg               >  1:3491338/1‑91 (MQ=255)

                                                                             ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg               >  1:213929/1‑91 (MQ=255)

                                                                               aCTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggaggga             >  1:595612/1‑91 (MQ=255)

                                                                                cTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAt            >  1:1701899/1‑91 (MQ=255)

                                                                                cTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAt            <  1:3216400/91‑1 (MQ=255)

                                                                                  gAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTc          >  1:1548048/1‑91 (MQ=255)

                                                                                        caaagcaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc    <  1:3779411/91‑1 (MQ=255)

                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAATCGTCCTGGGAGGGATTCGAAccccc  <  1:3870148‑M1/91‑1 (MQ=255)

                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  <  1:3945682‑M1/91‑1 (MQ=255)

                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  <  1:260059‑M1/91‑1 (MQ=255)

                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  <  1:3075810‑M1/91‑1 (MQ=255)

CGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCC  >  USA300TCH1516_ALE/1181752‑1181932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.