BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1181842 =	111 (1.130)	9 (0.100)	5/144	NT	9.2%	intergenic (+409/+65)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg
*	?	USA300TCH1516_ALE	1181881 =	77 (0.870)	9 (0.100)	5/144	NT	9.2%	intergenic (+448/+26)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg

Only 100 of 122 total aligned reads displayed.

CTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA  >  USA300TCH1516_ALE/1181791‑1181970

cTTATGCGGGGGACGTTTTGGTGACGCATCATAGTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                                                           <  1:3402341/91‑1 (MQ=255)

cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                                                           <  1:272502/91‑1 (MQ=255)

cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                                                           <  1:271131/91‑1 (MQ=255)

 ttATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                                                          <  1:1011081/91‑1 (MQ=255)

 gggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                                                          >  1:1943637‑M1/51‑91 (MQ=255)

   aTGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTa                                                                                        >  1:1948796/1‑91 (MQ=255)

    tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                                                       <  1:3777631/91‑1 (MQ=255)

     gCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAAt                                                                                      >  1:1326134/1‑91 (MQ=255)

     gCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAAt                                                                                      >  1:1326227/1‑91 (MQ=255)

      cGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATg                                                                                     <  1:355726/91‑1 (MQ=255)

      cGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATg                                                                                     <  1:1893034/91‑1 (MQ=255)

       gggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGc                                                                                    <  1:604302/91‑1 (MQ=255)

        ggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCg                                                                                   <  1:1239270/91‑1 (MQ=255)

        ggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCg                                                                                   >  1:149311/1‑91 (MQ=255)

        ggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCg                                                                                   >  1:1715051/1‑91 (MQ=255)

          ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                                                                 <  1:672750/91‑1 (MQ=255)

          ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                                                                 <  1:1491447/91‑1 (MQ=255)

          ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                                                                 <  1:1936149/91‑1 (MQ=255)

           gACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGtat                                                                                >  1:1022923/1‑91 (MQ=255)

            aCGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGtata                                                                               <  1:377011/91‑1 (MQ=255)

             cGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaa                                                                              <  1:1756231/91‑1 (MQ=255)

              gTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaa                                                                             <  1:3255369/91‑1 (MQ=255)

                tttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaaaa                                                                           >  1:1847738/1‑91 (MQ=255)

                 ttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAAt                                                                          >  1:433197/1‑91 (MQ=255)

                  tGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATa                                                                         >  1:3148149/1‑91 (MQ=255)

                     tGACGCATCCTACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCt                                                                      <  1:3964825/91‑1 (MQ=255)

                       aCGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCtat                                                                    >  1:3800314/1‑91 (MQ=255)

                       aCGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCtat                                                                    >  1:836236/1‑91 (MQ=255)

                         gCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaa                                                                  >  1:3644566/1‑91 (MQ=255)

                              atACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATACAAATACCTATAAACGTc                                                             >  1:3557409/1‑91 (MQ=255)

                               tACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTcc                                                            <  1:3372456/91‑1 (MQ=255)

                               tACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTcc                                                            <  1:1376611/91‑1 (MQ=255)

                                 cTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTg                                                          <  1:3243912/91‑1 (MQ=255)

                                 cTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTg                                                          <  1:55789/91‑1 (MQ=255)

                                  tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                                                         >  1:1647370/1‑91 (MQ=255)

                                  tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                                                         <  1:2449236/91‑1 (MQ=255)

                                  tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                                                         >  1:1647291/1‑91 (MQ=255)

                                    tatTACTGAAATTCAAAACAAAAAGAGCCCCGTTATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggga                                                       <  1:3681813/91‑1 (MQ=255)

                                     atTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggag                                                      >  1:2636477/1‑91 (MQ=255)

                                      ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg                                                     >  1:213929/1‑91 (MQ=255)

                                      ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg                                                     >  1:3491338/1‑91 (MQ=255)

                                        aCTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggaggga                                                   >  1:595612/1‑91 (MQ=255)

                                        aCTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggaggga                                                   >  1:1474201/1‑91 (MQ=255)

                                         cTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAt                                                  <  1:3216400/91‑1 (MQ=255)

                                         cTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAt                                                  >  1:1701899/1‑91 (MQ=255)

                                           gAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTc                                                >  1:1548048/1‑91 (MQ=255)

                                                 ccaaacaaaagagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc                                          >  1:1943637‑M2/42‑91 (MQ=255)

                                                 caaagcaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc                                          <  1:3779411/91‑1 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                        <  1:352906‑M1/91‑1 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                        <  1:3945682‑M1/91‑1 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                        <  1:3075810‑M1/91‑1 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                        <  1:260059‑M1/91‑1 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                        <  1:3076505‑M1/91‑1 (MQ=255)

                                                     ACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccga                                      <  1:827711‑M1/91‑1 (MQ=255)

                                                     ACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccga                                      >  1:2783414‑M1/1‑91 (MQ=255)

                                                     ACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccga                                      <  1:766131‑M1/91‑1 (MQ=255)

                                                     ACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccga                                      <  1:1637584‑M1/91‑1 (MQ=255)

                                                      CAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgac                                     >  1:368899‑M1/1‑91 (MQ=255)

                                                        AAAAGAGCCCCGTAATCACGGAACTCTTTTGTTAGGTAATGCGTATCAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccg                                   <  1:3307615‑M1/91‑1 (MQ=255)

                                                         AAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccga                                  >  1:1827409‑M1/1‑91 (MQ=255)

                                                         AAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccga                                  >  1:26663‑M1/1‑91 (MQ=255)

                                                         AAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccga                                  <  1:2162463‑M1/91‑1 (MQ=255)

                                                          agagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAt                                 >  1:418898‑M2/33‑91 (MQ=255)

                                                          agagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAt                                 >  1:3260163‑M2/33‑91 (MQ=255)

                                                          AAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAt                                 <  1:3815543‑M1/91‑1 (MQ=255)

                                                           gagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                >  1:3120597‑M2/32‑91 (MQ=255)

                                                           gagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                >  1:5222‑M2/32‑91 (MQ=255)

                                                           agagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGAGAGGGATTCGAACCCCCGACCGATg                                >  1:3846623/1‑91 (MQ=255)

                                                            gagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATgg                               <  1:1039208/91‑1 (MQ=255)

                                                            gagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATgg                               <  1:2811774/91‑1 (MQ=255)

                                                            gagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCAATAAACGTCCTGGTAGGGATTCGAACCCCCGACAGATgg                               >  1:3854125/1‑91 (MQ=255)

                                                             agttccgtgattacggggctcttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                              >  1:2649318‑M2/30‑91 (MQ=255)

                                                             agCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                              >  1:3084880/1‑91 (MQ=255)

                                                              gCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCt                             >  1:1692706/1‑91 (MQ=255)

                                                               ccccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCtt                            >  1:484928/1‑91 (MQ=255)

                                                               ccccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCtt                            <  1:1085860/91‑1 (MQ=255)

                                                                cccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTa                           >  1:3279310/1‑91 (MQ=255)

                                                                cccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTa                           >  1:3951525/1‑91 (MQ=255)

                                                                  cGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGa                         >  1:218990/1‑91 (MQ=255)

                                                                     aaTCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAgg                      >  1:1382843/1‑91 (MQ=255)

                                                                      aTCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGc                     <  1:884148/91‑1 (MQ=255)

                                                                        cACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCa                   >  1:3213768/1‑91 (MQ=255)

                                                                        cACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCa                   >  1:3213935/1‑91 (MQ=255)

                                                                         aCGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAt                  >  1:3937328/1‑91 (MQ=255)

                                                                         aCGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAt                  <  1:2214778/91‑1 (MQ=255)

                                                                          cGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAtt                 >  1:1886271/1‑91 (MQ=255)

                                                                            gAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGc               <  1:2050359/91‑1 (MQ=255)

                                                                            gAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGc               <  1:1462355/91‑1 (MQ=255)

                                                                            gAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGc               <  1:1160356/91‑1 (MQ=255)

                                                                            gAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGc               <  1:3263151/91‑1 (MQ=255)

                                                                                tctgttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTa           <  1:2490984‑M2/81‑1 (MQ=255)

                                                                                tctTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTa           <  1:2490242/91‑1 (MQ=255)

                                                                                tctTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTa           <  1:1559721/91‑1 (MQ=255)

                                                                                tctTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTa           <  1:2490243/91‑1 (MQ=255)

                                                                                  ttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATc         >  1:170944‑M2/9‑91 (MQ=255)

                                                                                   tttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATcc        <  1:3888297‑M2/84‑1 (MQ=255)

                                                                                   tttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATcc        >  1:476899‑M2/8‑91 (MQ=255)

                                                                                    ttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCa       >  1:2644439‑M2/7‑91 (MQ=255)

                                                                                         tGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGa  >  1:343800‑M2/2‑91 (MQ=255)

                                                                                         tGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGa  >  1:3169174‑M2/2‑91 (MQ=255)

CTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA  >  USA300TCH1516_ALE/1181791‑1181970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.