| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1182136 = | 106 (1.080) | 12 (0.140) | 8/140 | NT | 12.5% | intergenic (‑154/‑209) | USA300TCH1516_01103/USA300HOU_RS05895 | tRNA‑Arg/Antibacterial protein 3 |
| ? | USA300TCH1516_ALE | 1182166 = | 76 (0.880) | intergenic (‑184/‑179) | USA300TCH1516_01103/USA300HOU_RS05895 | tRNA‑Arg/Antibacterial protein 3 | |||||
TTTGATACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTGTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1182235‑1182136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAACA > USA300TCH1516_ALE/1182166‑1182255 TTTGATACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAA > 1:1073928/1‑91TTTGATACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAA > 1:1074194/1‑91TTTGATACAATTAGTTTGTTTATACGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAA < 1:2398146/91‑1 TTGATACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAA < 1:2189536/91‑1 TGATACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAAC > 1:3258130/1‑91 GATACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACT > 1:2320975/1‑91 ATACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTG < 1:309889/91‑1 ATACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTG < 1:2237879/91‑1 ACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTGTA < 1:998204/91‑1 ACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTGTA < 1:992743/91‑1 CAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTGTAT > 1:2782801/1‑91 AATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTGTATT > 1:449862/1‑91 ATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTGTATTT > 1:2176235/1‑91 GTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTTTGAATGCCTAACTGTATTTCTTT < 1:3021984/91‑1 TTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTGTATTTCTTTTC > 1:1714961/1‑91 CTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAG < 1:2162978/91‑1 AAATACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAT > 1:628964/1‑91 AAATACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAT > 1:629098/1‑91 AAATACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAT > 1:2687683/1‑91 AAATACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAT > 1:1892521/1‑91 AAATACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTCAAGTACATTATAAAATGTTGTGCGGATAAACAAACTAAT > 1:3855166/1‑91 AATACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATT > 1:416352/1‑91 ACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATCAGATGTTGTGCGGATAAACAAACTAATTGTA > 1:2581653/1‑91 ACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTA > 1:1078394/1‑91 AGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATC > 1:2875379/1‑91 GGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATT > 1:815867/1‑91 ACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAA > 1:1206515/1‑91 ACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAA > 1:1955066/1‑91 CTGTATTTCTTTTCTGTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAGACAAACTAATTGTATCAAATTTATTTTAAAAT > 1:3539038/1‑91 CTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAAT > 1:1161389/1‑91 TATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAAC > 1:1031534/1‑91 ATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACA < 1:1183134/91‑1 TTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAA > 1:880324/1‑91 TTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAAC < 1:657462/91‑1 TTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCCGATAAACAAACTAATTGTATCAAATTTATATTAAAATAACAAC > 1:4151668/1‑91 TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAACA < 1:2819263/91‑1 TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAACA > 1:2369070/1‑91 TTTGATACAATTAGTTTGTTTATCCGCACAACATCTTATAATGTACTTAACTGTATTTTAAAGAGAAAAGAAATACAGTTAGGCATTCAAAACTGTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1182235‑1182136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAACA > USA300TCH1516_ALE/1182166‑1182255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |