BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1182136 =	106 (1.080)	12 (0.140)	8/140	NT	12.5%	intergenic (‑154/‑209)	USA300TCH1516_01103/USA300HOU_RS05895	tRNA‑Arg/Antibacterial protein 3
*	?	USA300TCH1516_ALE	1182166 =	76 (0.880)	12 (0.140)	8/140	NT	12.5%	intergenic (‑184/‑179)	USA300TCH1516_01103/USA300HOU_RS05895	tRNA‑Arg/Antibacterial protein 3

Only 100 of 126 total aligned reads displayed.

TATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAACAA  >  USA300TCH1516_ALE/1182077‑1182256

tATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttct                                                                                           >  1:1275412/1‑91 (MQ=255)

 aTTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttctt                                                                                          <  1:3113714/91‑1 (MQ=255)

  tttATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttcttt                                                                                         >  1:3757037/1‑91 (MQ=255)

  tttATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttcttt                                                                                         <  1:2347106/91‑1 (MQ=255)

  gtttgtttatccgcacaacatcttataatgtacttaactgtattttaaagagaaaagaaatacagttttgaatgcctaactgtatttcttt                                                                                         <  1:3021984‑M2/4‑1 (MQ=255)

   ttATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttctttt                                                                                        <  1:2464480/91‑1 (MQ=255)

    ttgtttatccgcacaacatcttataatgtacttaactgtattttaaagagaaaagaaatacagttaggcattcaaaactgtatttcttttc                                                                                       >  1:1714961‑M2/86‑91 (MQ=255)

    tATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttcttttc                                                                                       <  1:3334996/91‑1 (MQ=255)

    tATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTAtttcttttc                                                                                       <  1:3738201/91‑1 (MQ=255)

      tCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTtctc                                                                                     >  1:3480184/1‑91 (MQ=255)

      tCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTtctc                                                                                     >  1:575491/1‑91 (MQ=255)

        tAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCtt                                                                                   <  1:2394153/91‑1 (MQ=255)

         aaaaaGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGCGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCttt                                                                                  >  1:3292830/1‑91 (MQ=255)

           aaaGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTaa                                                                                >  1:20224/1‑91 (MQ=255)

            aaGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTaaa                                                                               >  1:3777791/1‑91 (MQ=255)

              ggTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAAt                                                                             >  1:3388144/1‑91 (MQ=255)

              ggTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAAt                                                                             <  1:2159431/91‑1 (MQ=255)

              ggTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAAt                                                                             >  1:2101470/1‑91 (MQ=255)

              ggTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAAt                                                                             <  1:131176/91‑1 (MQ=255)

               gTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATa                                                                            >  1:3887950/1‑91 (MQ=255)

               gTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATa                                                                            >  1:3888087/1‑91 (MQ=255)

                 tCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACa                                                                          >  1:2627916/1‑91 (MQ=255)

                 tCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACa                                                                          <  1:2709829/91‑1 (MQ=255)

                  cAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAg                                                                         >  1:1909788/1‑91 (MQ=255)

                  cAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAg                                                                         <  1:4069148/91‑1 (MQ=255)

                   aaTAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGt                                                                        <  1:1999655/91‑1 (MQ=255)

                       cttataatgtacttaactgtattttaaagagaaaagAAATACAGTTAGGCATTCAAAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAg                                                                    <  1:2162978‑M1/55‑1 (MQ=255)

                       aGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAg                                                                    <  1:1188964/91‑1 (MQ=255)

                        gACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGt                                                                   >  1:2635106/1‑91 (MQ=255)

                         aCTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTa                                                                  >  1:2741439/1‑91 (MQ=255)

                         aCTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTa                                                                  >  1:2740849/1‑91 (MQ=255)

                         aCTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTa                                                                  >  1:639338/1‑91 (MQ=255)

                          cTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTAc                                                                 >  1:3503253/1‑91 (MQ=255)

                            tAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTACTCTTTAAAATACAGTTAAGTACAt                                                               >  1:3854465/1‑91 (MQ=255)

                             aaaTACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACAtt                                                              >  1:15787/1‑91 (MQ=255)

                             aaaTACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACAtt                                                              >  1:1177256/1‑91 (MQ=255)

                              aaTACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATta                                                             >  1:1517047/1‑91 (MQ=255)

                               aTACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATtat                                                            <  1:1143641/91‑1 (MQ=255)

                                    aaTTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGAt                                                       >  1:2879564/1‑91 (MQ=255)

                                      ttCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGAtgt                                                     <  1:340710/91‑1 (MQ=255)

                                      ttCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGAtgt                                                     >  1:2243868/1‑91 (MQ=255)

                                        cAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGAtgttg                                                   <  1:1718385/91‑1 (MQ=255)

                                          ggCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTtgtg                                                 >  1:2617717/1‑91 (MQ=255)

                                           gCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGc                                                >  1:3731264/1‑91 (MQ=255)

                                           gCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGc                                                <  1:556254/91‑1 (MQ=255)

                                           gCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGc                                                <  1:285931/91‑1 (MQ=255)

                                           gCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGc                                                <  1:557079/91‑1 (MQ=255)

                                            cAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCg                                               <  1:1025771/91‑1 (MQ=255)

                                              aCTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGa                                             >  1:3751167/1‑91 (MQ=255)

                                               cTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGAt                                            >  1:1819093/1‑91 (MQ=255)

                                                ttAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATa                                           <  1:465864/91‑1 (MQ=255)

                                                 tAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaa                                          <  1:2403246/91‑1 (MQ=255)

                                                 tAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaa                                          <  1:1985692/91‑1 (MQ=255)

                                                 tAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaa                                          <  1:3272425/91‑1 (MQ=255)

                                                  aaTTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaa                                         >  1:70995/1‑91 (MQ=255)

                                                   aTTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaac                                        <  1:3663318/91‑1 (MQ=255)

                                                   aTTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaac                                        <  1:2678536/91‑1 (MQ=255)

                                                   aTTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaac                                        <  1:1994618/91‑1 (MQ=255)

                                                    ttGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaaca                                       >  1:399159/1‑91 (MQ=255)

                                                     gaaaagAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaacaa                                      >  1:1714961‑M1/7‑91 (MQ=255)

                                                      gtgtTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaacaaa                                     >  1:600875/1‑91 (MQ=255)

                                                       tgtTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATaaacaaac                                    <  1:1332654/91‑1 (MQ=255)

                                                         ttAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTa                                  >  1:3339238/1‑91 (MQ=255)

                                                         ttAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACACTATAAGATGTTGTGCGGATAAACAAGCTa                                  >  1:3339488/1‑91 (MQ=255)

                                                           aaatacagttaggcattcaaaactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAt                                >  1:628964‑M2/31‑91 (MQ=255)

                                                           aaatacagttaggcattcaaaactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAt                                >  1:1892521‑M2/31‑91 (MQ=255)

                                                           aaatacagttaggcattcaaaactgtatttCTTTTCTCTTTAAAATACAGTCAAGTACATTATAAAATGTTGTGCGGATAAACAAACTAAt                                >  1:3855166‑M2/31‑91 (MQ=255)

                                                           AAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAt                                >  1:2176235‑M1/1‑91 (MQ=255)

                                                            AATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAAtt                               >  1:449862‑M1/1‑91 (MQ=255)

                                                              TACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGt                             <  1:992743‑M1/91‑1 (MQ=255)

                                                               acagttaggcattcaaaactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATCAGATGTTGTGCGGATAAACAAACTAATTGTa                            >  1:2581653‑M2/27‑91 (MQ=255)

                                                                CAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTAt                           <  1:309889‑M1/91‑1 (MQ=255)

                                                                CAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTAt                           <  1:2237879‑M1/91‑1 (MQ=255)

                                                                 agttaggcattcaaaactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATc                          >  1:2875379‑M2/25‑91 (MQ=255)

                                                                  GTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCa                         >  1:3258130‑M1/1‑91 (MQ=255)

                                                                   TTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCaa                        <  1:2189536‑M1/91‑1 (MQ=255)

                                                                    TTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGTATAAACAAACTAATTGTATCaaa                       <  1:2398146‑M1/91‑1 (MQ=255)

                                                                    TTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCaaa                       >  1:1073928‑M1/1‑91 (MQ=255)

                                                                    TTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCaaa                       >  1:1074194‑M1/1‑91 (MQ=255)

                                                                     ttGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAat                      <  1:3149623/91‑1 (MQ=255)

                                                                     ttGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAat                      >  1:577782/1‑91 (MQ=255)

                                                                      ggcattcaaaactgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAatt                     >  1:815867‑M2/20‑91 (MQ=255)

                                                                       gAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAattt                    <  1:3658696/91‑1 (MQ=255)

                                                                       gAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAattt                    >  1:1256011/1‑91 (MQ=255)

                                                                         aTGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAatttat                  <  1:2673371/91‑1 (MQ=255)

                                                                          tGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAatttatt                 <  1:3113759/91‑1 (MQ=255)

                                                                          tGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAatttatt                 <  1:1407360/91‑1 (MQ=255)

                                                                          tGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAatttatt                 <  1:877295/91‑1 (MQ=255)

                                                                            ccTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTAtttt               <  1:1854796/91‑1 (MQ=255)

                                                                                actgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTaaaa           >  1:1206515‑M2/10‑91 (MQ=255)

                                                                                 ctgtatttCTTTTCTGTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAGACAAACTAATTGTATCAAATTTATTTTAAAAt          >  1:3539038‑M2/9‑91 (MQ=255)

                                                                                 ctgtatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAAt          >  1:1161389‑M2/9‑91 (MQ=255)

                                                                                    tatttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaac       >  1:1031534‑M2/6‑91 (MQ=255)

                                                                                     atttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaaca      <  1:1183134‑M2/87‑1 (MQ=255)

                                                                                      tttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaacaa     >  1:880324‑M2/4‑91 (MQ=255)

                                                                                       ttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaacaac    <  1:657462‑M2/89‑1 (MQ=255)

                                                                                       ttCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCCGATAAACAAACTAATTGTATCAAATTTATATTAAAATaacaac    >  1:4151668‑M2/3‑91 (MQ=255)

                                                                                        tCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAacaaca   <  1:2819263‑M2/90‑1 (MQ=255)

                                                                                        tCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAacaaca   >  1:2369070‑M2/2‑91 (MQ=255)

                                                                                         cttttctCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATaacaacaa  <  1:4004835/91‑1 (MQ=255)

TATTTATCTAAAAAGGTTCAATAAGACTTAAATACGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATTTCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTAATTGTATCAAATTTATTTTAAAATAACAACAA  >  USA300TCH1516_ALE/1182077‑1182256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.