| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1182690 = | 121 (1.230) | 5 (0.060) | 4/136 | NT | 5.1% | intergenic (+20/‑113) | USA300HOU_RS05900/yfnB | Antibacterial protein 3/Putative HAD‑hydrolase YfnB |
| ? | USA300TCH1516_ALE | 1182741 = | 84 (1.010) | intergenic (+71/‑62) | USA300HOU_RS05900/yfnB | Antibacterial protein 3/Putative HAD‑hydrolase YfnB | |||||
CCTATATTGTCTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1182791‑1182690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACT > USA300TCH1516_ALE/1182741‑1182830 CCTATATTGTCTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCC < 1:611502/91‑1CCTATATTGTCTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCC < 1:3510268/91‑1 TATTGTCTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTT < 1:1123426/91‑1 ATTGTCTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTT > 1:3276391/1‑91 ATTGTCTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTT > 1:3276447/1‑91 TTGTCTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCGCCCAGGTTA > 1:3729635/1‑91 GTCTATGTATCCAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATT < 1:3753583/91‑1 CTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTT > 1:3637743/1‑91 CTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTT > 1:3636748/1‑91 CTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTT > 1:3636216/1‑91 CTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTT > 1:3636019/1‑91 AAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAG > 1:1775394/1‑91 ATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACA > 1:2899291/1‑91 ATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACA > 1:801116/1‑91 TAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAA > 1:2016056/1‑91 GCATAACATTAAAGTATGCTCACCCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGAT > 1:505987/1‑91 CAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATAT < 1:3842648/91‑1 GTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTT > 1:2882238/1‑91 GTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTT > 1:2882159/1‑91 ATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGAT < 1:2678356/91‑1 TATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGAC > 1:3253823/1‑91 ATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACT < 1:3958133/91‑1 ATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACT < 1:4053337/91‑1 ATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACT < 1:4053477/91‑1 CCTATATTGTCTATGTATCTAAATCTTAACAGAGGCTCAAATTTCTGCAAATAAAATAAACTGAGTGCATAACATTAAAGTATGCTCACCCAGTTTATTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1182791‑1182690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACT > USA300TCH1516_ALE/1182741‑1182830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |