BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1182690 =	121 (1.230)	5 (0.060)	4/136	NT	5.1%	intergenic (+20/‑113)	USA300HOU_RS05900/yfnB	Antibacterial protein 3/Putative HAD‑hydrolase YfnB
*	?	USA300TCH1516_ALE	1182741 =	84 (1.010)	5 (0.060)	4/136	NT	5.1%	intergenic (+71/‑62)	USA300HOU_RS05900/yfnB	Antibacterial protein 3/Putative HAD‑hydrolase YfnB

Only 100 of 126 total aligned reads displayed.

GTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACTT  >  USA300TCH1516_ALE/1182651‑1182831

gTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGtttattttat                                                                                            >  1:3302405/1‑91 (MQ=255)

gTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGtttattttat                                                                                            >  1:1767833/1‑91 (MQ=255)

gTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGtttattttat                                                                                            >  1:2888782/1‑91 (MQ=255)

gTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGtttattttat                                                                                            >  1:575104/1‑91 (MQ=255)

   aaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTg                                                                                         <  1:608208/91‑1 (MQ=255)

   aaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTg                                                                                         <  1:608145/91‑1 (MQ=255)

   aaTTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTg                                                                                         <  1:608221/91‑1 (MQ=255)

     ttattTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCa                                                                                       >  1:3983503/1‑91 (MQ=255)

     ttattTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCa                                                                                       >  1:2480684/1‑91 (MQ=255)

     ttattTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCa                                                                                       <  1:134082/91‑1 (MQ=255)

     ttattTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCa                                                                                       >  1:2198316/1‑91 (MQ=255)

      tattTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAg                                                                                      >  1:2279959/1‑91 (MQ=255)

       attTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGa                                                                                     <  1:28888/91‑1 (MQ=255)

       attTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGa                                                                                     <  1:697495/91‑1 (MQ=255)

        tttGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGaa                                                                                    >  1:1892717/1‑91 (MQ=255)

            gATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAttt                                                                                >  1:729209/1‑91 (MQ=255)

            gATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAttt                                                                                <  1:614349/91‑1 (MQ=255)

            gATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAttt                                                                                >  1:2404571/1‑91 (MQ=255)

            gATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAttt                                                                                >  1:604222/1‑91 (MQ=255)

            gATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAttt                                                                                <  1:596509/91‑1 (MQ=255)

            gATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAAttt                                                                                <  1:352536/91‑1 (MQ=255)

               tCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAg                                                                             >  1:1897620/1‑91 (MQ=255)

               tCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAg                                                                             >  1:1897686/1‑91 (MQ=255)

               tCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAg                                                                             <  1:1042213/91‑1 (MQ=255)

                ataatataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACCCAGTTTATTTTATTTGCAGAAATTTGAGc                                                                            >  1:3331823/2‑91 (MQ=255)

                  aatataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCct                                                                          >  1:3797192/1‑91 (MQ=255)

                  aatataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCct                                                                          >  1:1889388/1‑91 (MQ=255)

                     ataataACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTg                                                                       <  1:935543/91‑1 (MQ=255)

                      taataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGt                                                                      >  1:3633618/1‑91 (MQ=255)

                      taataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGt                                                                      <  1:2305698/91‑1 (MQ=255)

                      taataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGt                                                                      <  1:1854739/91‑1 (MQ=255)

                      taataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGt                                                                      <  1:1428946/91‑1 (MQ=255)

                      taataaCTAATATTCTTAAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGt                                                                      <  1:2427227/91‑1 (MQ=255)

                        ataaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTa                                                                    >  1:461016/1‑91 (MQ=255)

                          aaCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATCCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAg                                                                  >  1:4134702/1‑91 (MQ=255)

                           aCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGa                                                                 <  1:1658720/91‑1 (MQ=255)

                           aCTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGa                                                                 <  1:1658897/91‑1 (MQ=255)

                            cTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAt                                                                >  1:1339065/1‑91 (MQ=255)

                             tAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAtt                                                               >  1:761620/1‑91 (MQ=255)

                             tAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAtt                                                               <  1:490580/91‑1 (MQ=255)

                              aaTATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGAttt                                                              <  1:1323293/91‑1 (MQ=255)

                                tatTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAg                                                            >  1:1781708/1‑91 (MQ=255)

                                tatTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAg                                                            <  1:2419865/91‑1 (MQ=255)

                                tatTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAg                                                            <  1:1129985/91‑1 (MQ=255)

                                 atTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGa                                                           <  1:2902221/91‑1 (MQ=255)

                                  ttCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGAt                                                          >  1:1926095/1‑91 (MQ=255)

                                  ttCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGAt                                                          >  1:1925354/1‑91 (MQ=255)

                                   tCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATa                                                         >  1:549681/1‑91 (MQ=255)

                                     tttAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACa                                                       >  1:385835/1‑91 (MQ=255)

                                      ttAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACAt                                                      >  1:1838647/1‑91 (MQ=255)

                                        aaaataaactgagtgcataacattaaagtatgctcacccagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAg                                                    >  1:1775394‑M2/51‑91 (MQ=255)

                                        AAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAg                                                    >  1:3636019‑M1/1‑91 (MQ=255)

                                        AAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAg                                                    >  1:3636216‑M1/1‑91 (MQ=255)

                                        AAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAg                                                    >  1:3636748‑M1/1‑91 (MQ=255)

                                          AATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTGGATACATAGAc                                                  <  1:3753583‑M1/91‑1 (MQ=255)

                                           ataaactgagtgcataacattaaagtatgctcacccagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACa                                                 >  1:2899291‑M2/48‑91 (MQ=255)

                                           ataaactgagtgcataacattaaagtatgctcacccagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACa                                                 >  1:801116‑M2/48‑91 (MQ=255)

                                            TAACCTGGGCGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACaa                                                >  1:3729635‑M1/1‑91 (MQ=255)

                                             AAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAat                                               >  1:3276391‑M1/1‑91 (MQ=255)

                                             AAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAat                                               >  1:3276447‑M1/1‑91 (MQ=255)

                                              AACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAata                                              <  1:1123426‑M1/91‑1 (MQ=255)

                                                  GGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAgg                                          <  1:611502‑M1/91‑1 (MQ=255)

                                                  GGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAgg                                          <  1:3510268‑M1/91‑1 (MQ=255)

                                                    gTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGgag                                        >  1:3809571/1‑91 (MQ=255)

                                                    gTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGgag                                        >  1:3133924/1‑91 (MQ=255)

                                                    gTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGgag                                        >  1:2897999/1‑91 (MQ=255)

                                                      gcataacattaaagtatgctcacccagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGAt                                      >  1:505987‑M2/37‑91 (MQ=255)

                                                       aGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATg                                     <  1:3937261/91‑1 (MQ=255)

                                                         cATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATggg                                   >  1:1119072/1‑91 (MQ=255)

                                                         cATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATggg                                   <  1:2799289/91‑1 (MQ=255)

                                                          aTACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATgggg                                  <  1:927078/91‑1 (MQ=255)

                                                            aCTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGaa                                >  1:536309/1‑91 (MQ=255)

                                                            aCTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGaa                                >  1:21106/1‑91 (MQ=255)

                                                            aCTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGaa                                >  1:2241975/1‑91 (MQ=255)

                                                            aCTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGaa                                >  1:2241371/1‑91 (MQ=255)

                                                              tttAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAAt                              >  1:3923867/1‑91 (MQ=255)

                                                                  aTGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTggg                          >  1:925647/1‑91 (MQ=255)

                                                                  aTGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTggg                          >  1:4055485/1‑91 (MQ=255)

                                                                    gTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGat                        >  1:1769488/1‑91 (MQ=255)

                                                                      tATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGatat                      >  1:3946072/1‑91 (MQ=255)

                                                                       aTGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGAtata                     <  1:697165/91‑1 (MQ=255)

                                                                       aTGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGAtata                     >  1:2823186/1‑91 (MQ=255)

                                                                        tGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATaa                    >  1:2115010/1‑91 (MQ=255)

                                                                         gCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATaaa                   <  1:1274965/91‑1 (MQ=255)

                                                                         gCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATaaa                   >  1:846995/1‑91 (MQ=255)

                                                                          cACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATaaaa                  <  1:1518808/91‑1 (MQ=255)

                                                                          cACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATaaaa                  >  1:3976796/1‑91 (MQ=255)

                                                                             tCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAata               <  1:2516564/91‑1 (MQ=255)

                                                                             tCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAata               <  1:2516548/91‑1 (MQ=255)

                                                                             tCAGTTTATTTTATTTACAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAata               <  1:2515361/91‑1 (MQ=255)

                                                                              cagtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAatat              <  1:3842648‑M2/79‑1 (MQ=255)

                                                                                gtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATAttt            >  1:2882159‑M2/11‑91 (MQ=255)

                                                                                gtttattttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATAttt            >  1:2882238‑M2/11‑91 (MQ=255)

                                                                                    attttaTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGAt        <  1:2678356‑M2/85‑1 (MQ=255)

                                                                                        taTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGAc    >  1:3253823‑M2/3‑91 (MQ=255)

                                                                                         aTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACt   <  1:4053477‑M2/90‑1 (MQ=255)

                                                                                         aTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACt   <  1:4053337‑M2/90‑1 (MQ=255)

                                                                                         aTTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACt   <  1:3958133‑M2/90‑1 (MQ=255)

                                                                                          tttGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTTATAGACtt  >  1:2417455/1‑91 (MQ=255)

                                                                                          tttGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACtt  >  1:2757678/1‑91 (MQ=255)

GTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGTGAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTAAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGATAGACTT  >  USA300TCH1516_ALE/1182651‑1182831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.