| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1183556 | 113 (1.150) | 9 (0.100) | 7/140 | NT | 7.7% | intergenic (+67/+42) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase |
| ? | USA300TCH1516_ALE | = 1183574 | 116 (1.350) | intergenic (+85/+24) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase | |||||
TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1183457‑1183556‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacactacgaGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC < USA300TCH1516_ALE/1183574‑1183485 TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAG > 1:1298834/1‑91TCATGGAAACAAATAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAACAAG > 1:3211960/1‑91 CATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGA > 1:1582447/1‑91 CATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGA > 1:3350898/1‑91 CATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGA > 1:2578614/1‑91 GGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACAC < 1:2473722/91‑1 GAAACAAGTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACT < 1:2075585/91‑1 CAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGA < 1:3697380/91‑1 ACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGC > 1:4100171/1‑91 ATGAGATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAA > 1:3277076/1‑91 CGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTT < 1:3677492/91‑1 TAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCG < 1:3776597/91‑1 ACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGT < 1:2641839/91‑1 CAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:3981104/91‑1 CAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:3980084/91‑1 CAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:3407912/91‑1 ATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCT < 1:2700857/91‑1 AAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACA < 1:1313192/91‑1 ACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTT > 1:1358721/1‑91 ACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTT > 1:96415/1‑91 ACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTT > 1:1357615/1‑91 ACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTT > 1:1357653/1‑91 ACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTT > 1:1164136/1‑91 ACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTT > 1:296861/1‑91 CACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTG > 1:3939524/1‑91 ACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGT < 1:1615809/91‑1 ACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGT < 1:1616290/91‑1 CTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTC > 1:3946957/1‑91 CTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTC > 1:1705756/1‑91 CTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTC > 1:3987762/1‑91 CTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTC < 1:2687109/91‑1 AGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC > 1:1577900/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC > 1:1531960/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC > 1:3917626/1‑91 TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1183457‑1183556‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacactacgaGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC < USA300TCH1516_ALE/1183574‑1183485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |