BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1183556	113 (1.150)	9 (0.100)	7/140	NT	7.7%	intergenic (+67/+42)	yfnB/USA300HOU_RS05910	Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase
*	?	USA300TCH1516_ALE	= 1183574	116 (1.350)	9 (0.100)	7/140	NT	7.7%	intergenic (+85/+24)	yfnB/USA300HOU_RS05910	Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase

Only 100 of 160 total aligned reads displayed.

CGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGA  >  USA300TCH1516_ALE/1183484‑1183664

cGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGc                                                                                            <  1:744461/91‑1 (MQ=255)

 gTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCt                                                                                           >  1:1577900‑M2/1‑90 (MQ=255)

 gTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCt                                                                                           >  1:3917626‑M2/1‑90 (MQ=255)

 gTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCt                                                                                           >  1:1531960‑M2/1‑90 (MQ=255)

      gACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtag                                                                                      >  1:3946957‑M2/1‑85 (MQ=255)

      gACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtag                                                                                      >  1:3987762‑M2/1‑85 (MQ=255)

      gACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtag                                                                                      <  1:2687109‑M2/91‑7 (MQ=255)

      gACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtag                                                                                      >  1:1705756‑M2/1‑85 (MQ=255)

       aCAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagt                                                                                     <  1:1615809‑M2/91‑8 (MQ=255)

        cAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagtg                                                                                    >  1:3939524‑M2/1‑83 (MQ=255)

         aaaTAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagtgt                                                                                   >  1:296861‑M2/1‑82 (MQ=255)

         aaaTAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagtgt                                                                                   >  1:1357653‑M2/1‑82 (MQ=255)

         aaaTAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagtgt                                                                                   >  1:1357615‑M2/1‑82 (MQ=255)

           ataatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCg                                                                                 <  1:2366957/91‑1 (MQ=255)

           ataatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCg                                                                                 <  1:3056375/91‑1 (MQ=255)

            taatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGa                                                                                >  1:1977325/1‑91 (MQ=255)

             aatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGaa                                                                               >  1:3585402/1‑91 (MQ=255)

              atTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAat                                                                              <  1:881938/91‑1 (MQ=255)

               tttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAata                                                                             >  1:2719677/1‑91 (MQ=255)

                  gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta                                                                          >  1:374311/1‑91 (MQ=255)

                  gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta                                                                          >  1:374297/1‑91 (MQ=255)

                  gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta                                                                          <  1:1237332/91‑1 (MQ=255)

                   aaaaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAACAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattat                                                                         >  1:3588509/1‑91 (MQ=255)

                   aaaaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattat                                                                         <  1:647986/91‑1 (MQ=255)

                   aaaaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattat                                                                         <  1:648079/91‑1 (MQ=255)

                    aaaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattatt                                                                        <  1:2584514/91‑1 (MQ=255)

                     aaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattatta                                                                       <  1:2826896/91‑1 (MQ=255)

                        gATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCt                                                                    <  1:530502/91‑1 (MQ=255)

                        gATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCt                                                                    <  1:2150589/91‑1 (MQ=255)

                          tttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTa                                                                  >  1:3442214/1‑91 (MQ=255)

                           ttACTTATATTAGCTTAAGAAAGTAATTGTAAAAACGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTAt                                                                 <  1:876302/91‑1 (MQ=255)

                           ttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTAt                                                                 <  1:1854954/91‑1 (MQ=255)

                             aCTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATgg                                                               >  1:2002278/1‑91 (MQ=255)

                               ttATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGtt                                                             <  1:2875542/91‑1 (MQ=255)

                                 atatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTc                                                           <  1:3709043/91‑1 (MQ=255)

                                  tatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTcc                                                          >  1:230964/1‑91 (MQ=255)

                                  tatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTcc                                                          >  1:1134401/1‑91 (MQ=255)

                                    ttAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCcac                                                        >  1:3234696/1‑91 (MQ=255)

                                        cTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATa                                                    >  1:1573676/1‑91 (MQ=255)

                                          tAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAg                                                  >  1:4015987/1‑91 (MQ=255)

                                           aaGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGa                                                 >  1:2534198/1‑91 (MQ=255)

                                           aaGAAAGTAATTCTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGa                                                 >  1:3182707/1‑91 (MQ=255)

                                            aGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAc                                                >  1:2327981/1‑91 (MQ=255)

                                             gAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAca                                               >  1:656078/1‑91 (MQ=255)

                                              aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                              <  1:1614699/91‑1 (MQ=255)

                                              aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                              <  1:446/91‑1 (MQ=255)

                                              aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                              <  1:2479124/91‑1 (MQ=255)

                                              aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                              >  1:172822/1‑91 (MQ=255)

                                              aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                              >  1:2347340/1‑91 (MQ=255)

                                               aaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcatc                                             <  1:879954/91‑1 (MQ=255)

                                                aGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAgatca                                            >  1:3456463/1‑91 (MQ=255)

                                                 gTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcatcat                                           >  1:2517012/1‑91 (MQ=255)

                                                    aTTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTc                                        >  1:2888792/1‑91 (MQ=255)

                                                     ttGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTcc                                       >  1:103777/1‑91 (MQ=255)

                                                      tGTCAAAAATACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTccc                                      <  1:3732073/91‑1 (MQ=255)

                                                      tGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcatttt                                      <  1:1313192‑M2/91‑55 (MQ=255)

                                                      tGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTccc                                      <  1:391257/91‑1 (MQ=255)

                                                      tGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTccc                                      >  1:317318/1‑91 (MQ=255)

                                                      tGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTccc                                      >  1:1637035/1‑91 (MQ=255)

                                                      tGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTccc                                      >  1:1034673/1‑91 (MQ=255)

                                                       gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct                                     >  1:3633885/1‑91 (MQ=255)

                                                       gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTACct                                     >  1:3633901/1‑91 (MQ=255)

                                                       gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTAGTAGTGTCCAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct                                     >  1:3304948/1‑91 (MQ=255)

                                                        tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc                                    <  1:3993116/91‑1 (MQ=255)

                                                        tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc                                    <  1:986802/91‑1 (MQ=255)

                                                        tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc                                    <  1:221515/91‑1 (MQ=255)

                                                         aaaaaaGACACTACGAAAAGATGCAGTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctct                                   <  1:3849825/91‑1 (MQ=255)

                                                             aaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTatat                               <  1:4105195/91‑1 (MQ=255)

                                                               gACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttt                             >  1:1164117/1‑91 (MQ=255)

                                                                acacTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAtttt                            <  1:162357/91‑1 (MQ=255)

                                                                 cacTACGAAAAGATGCATTTTCATGCtcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttg                           <  1:3981104‑M2/91‑66 (MQ=255)

                                                                 cacTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttttt                           >  1:673436/1‑91 (MQ=255)

                                                                  acTACGAAAAGATGCATTTTCATGCtcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgt                          <  1:2641839‑M2/91‑67 (MQ=255)

                                                                  acTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTa                          >  1:338621/1‑91 (MQ=255)

                                                                    tACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGc                        >  1:1523483/1‑91 (MQ=255)

                                                                    tACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGc                        >  1:2756706/1‑91 (MQ=255)

                                                                    tACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGc                        >  1:1523696/1‑91 (MQ=255)

                                                                    tACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGc                        >  1:4029186/1‑91 (MQ=255)

                                                                     aCGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCt                       <  1:560639/91‑1 (MQ=255)

                                                                       gAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTc                     <  1:3026635/91‑1 (MQ=255)

                                                                       gAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTc                     <  1:1404996/91‑1 (MQ=255)

                                                                       gAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTc                     <  1:1404957/91‑1 (MQ=255)

                                                                       gAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTc                     <  1:1403116/91‑1 (MQ=255)

                                                                         aaaGATGCATTTTCATGCtcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtcttaacg                   <  1:3677492‑M2/91‑74 (MQ=255)

                                                                          aaGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCcac                  >  1:526061/1‑91 (MQ=255)

                                                                           aGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCcaca                 <  1:214424/91‑1 (MQ=255)

                                                                             aTGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATc               >  1:3439466/1‑91 (MQ=255)

                                                                             aTGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATc               >  1:1182127/1‑91 (MQ=255)

                                                                             aTGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATc               >  1:1849200/1‑91 (MQ=255)

                                                                              tGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCt              <  1:3908136/91‑1 (MQ=255)

                                                                               gCATTCTCATGCTCGTAGTGTCGAATATTATTATCTTATAGTTTCCACAATAATACATCATGTCCCTCTATATTTTTAGCTTCCACATCTg             <  1:3858368/91‑1 (MQ=255)

                                                                                cATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGt            <  1:4068609/91‑1 (MQ=255)

                                                                                cATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGt            >  1:32573/1‑91 (MQ=255)

                                                                                cATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGt            <  1:4064463/91‑1 (MQ=255)

                                                                                 aTTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCCTGTCCCTCTATATTTTTAGCTTCCACATCTGTa           >  1:3883603/1‑91 (MQ=255)

                                                                                        tGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCat    >  1:1845034/1‑91 (MQ=255)

                                                                                         gCtcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtcttaacgtacaatatcatttagt   >  1:4100171‑M2/1‑2 (MQ=255)

                                                                                         gCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatg   <  1:1688209/91‑1 (MQ=255)

                                                                                         gCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatg   <  1:95618/91‑1 (MQ=255)

                                                                                         gCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatg   <  1:3401084/91‑1 (MQ=255)

CGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGA  >  USA300TCH1516_ALE/1183484‑1183664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.