| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1227656 | 89 (0.910) | 10 (0.110) | 8/148 | NT | 10.7% | coding (125/489 nt) | def1 | Peptide deformylase 1 |
| ? | USA300TCH1516_ALE | = 1227672 | 85 (0.930) | coding (141/489 nt) | def1 | Peptide deformylase 1 | |||||
CATCCTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1227562‑1227656‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacaTAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTTGCG < USA300TCH1516_ALE/1227672‑1227584 CATCCTATTTTAACGAAAAAAGCGCAAGCTGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATG < 1:3330221/91‑1CATCCTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATG > 1:47420/1‑91CATCCTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATG < 1:2684783/91‑1 ATCCTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATGCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGC > 1:4143527/1‑91 TCCTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCA > 1:925594/1‑91 CCTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCAC < 1:3904245/91‑1 CCTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCAC > 1:3418098/1‑91 CTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACA > 1:894552/1‑91 CTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACA > 1:894523/1‑91 CTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACA > 1:2306772/1‑91 AAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAG < 1:3693475/91‑1 AAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAGC < 1:449781/91‑1 AAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAGCT < 1:410158/91‑1 AAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAGCTTC < 1:2934131/91‑1 AAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAGCTTC < 1:606296/91‑1 GCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAGCTTCTTGT < 1:1918713/91‑1 CAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAGCTTCTTGTGCATA < 1:735077/91‑1 AGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAGCTTCTTGTGCATAC < 1:1560184/91‑1 AGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAGCTTCTTGTGCATAC < 1:1559732/91‑1 TTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACATAAGCCAGCAGCTTCTTGTGCATACAT < 1:2187613/91‑1 GCACATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTT > 1:3822120/1‑91 GCACATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTT < 1:2177395/91‑1 GCACATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTT > 1:476959/1‑91 CACATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTTG > 1:1359309/1‑91 ACATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTCACTGCTTGC > 1:3979408/1‑91 ACATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTTGC < 1:240231/91‑1 ACATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTTGC < 1:2813916/91‑1 CATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTTGCG < 1:2175879/91‑1 CATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTTGCG < 1:2175878/91‑1 CATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTTGCG < 1:584033/91‑1 CATAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTTGCG < 1:883125/91‑1 CATCCTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1227562‑1227656‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacaTAAGCCAGCAGCTTCTTGTGCATACATTGTATCTTCTAAATCTTGTAATAATCTTTTTAACGAATCATCAAATGTTTTAACTGCTTGCG < USA300TCH1516_ALE/1227672‑1227584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |